Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0416 ATGGAACGCCGGAAAACGCTGACCATGAGCTGGGACGGCCTTGGCGACGTTGACGACGACGACGCCTTCTTTGAGTCCTACAACCGCCTCTCCACGGCCGTTCCCCACGACCTCGCTTCTTCCTCCGAAGATGAAGATGAAGATTTCGACGACCCTCGATTGTCCTTTGCCTCAGCCATTTCCTCTGCTCAATCTCGAAAACCTAGAGCCACTCCACAGACCGATCCAGCTCCAGATTACGGGATATGGATGGCAGCCCCTGCTTCAATCAGCGAAAGAAGAAAGCGATTGCTCCATGGCATGGGCCTCGACGACAACAAAGAGTTCTTGAAGGCCACCAGCATCAAGCTCAATCACGCAATCTCAAGAAAGTTTGAACAAGAACAGGACAATCCTGTTTCTTTAAATTCAACAAAGACATCAAAGCTTCCTCCCACCACTGTTACTGTTACTACTTGTAATTCCTCCTCTATTACTGAGGAGAAAAGAACAGAGCCAACAGAGCGCACCTCTGTTCCTCTGGGTTTGGTTCGGTCGCGTTCTGAGAGCGACATGGATTCGTTCTCCGTTGAAAAGTTCAGGAAAGAAGAGTTGATCGGCAAGGCGTCGAAGCAGCGCCTCATGAGGACTGCCACTGACATAGCCTTTCCTCGGAAGGTTGCTAATAATGCTGATGGAAACAGAGTGGGGGTGAGGGATTCTGATGAAACAGGACGATCCAAGCGTAAATTGGAGGAATCAGGAGTACGAGCGTTCTTCTTGATAAAGAATTTGGATACTGGAAAAGAGTTTATTGTGAACGAGTATGGTGAAAATGGGACGTGGAATAGGTTGAGTGACTTGCAAACTGGGAAGCAATTAACGATGGAGGAGTTTGAGAAGACAGTGGGGCAATCGCGCGTGGTGAATGAGCTGATGAGGCGTGCGAACGTTGGAAGGAACGAGGGTTACTCGAGGAAATTGTCGTCGAGTTCGTATATTTCGAGGAGTTTGAGGATGAGCAAGAGGAGAGGTGCTGCATTGTTGAAGAACATAAAGGGTGTGGCCAGTGGCTTCATTGGGGAGAGAGAAAGGGAAGCGGTGCATGTGCAGGCGCAAGTGACGGAGGCAAAGAATCAATGGGTGAAAGTTCGGCAAAGTGGCAAGTCACACAAAGAACTCTCAGCGTTGCATCTTTGTCAAGAGCTTCTGGCTCATGAAGGATGCATTTGGACCATTAGGTTTAGCTTAGATGGTCGTTTTTTGGCGAGTGGTGGAGAGGACAATGTCATTCACGTTTGGGAAGTTCAAGAATGTGAGGTCATGTCTCTGAGGCCTGACGAGGGAAATCTCACTCCCCTTCATCCCTCACTGCTCTCTTCCGTTGACCGAAATGCCCAAACAGAGCCTTCTTCTTCACCTTCTTGGAGTCAGAAGAAGAAGAAAGGCAAATTTGGAAGCAAAAGAGGGAGCCTCATTCCAGAATATGTTCATGTTCCCGACACTGTTTTCTCCCTTTCTGAGAAGCCACATTGCTCTTTTCGAGGACATTCGGATGATGTTTTGGATTTGTCTTGGTCTAAATCTCAGTTGCTTCTCTCGTCTTCGATGGATAAAACAGTGAGATTATGGGATTTGGAAACCAAGACTTGTTTGAAGATGTTTGCTCATAATGACTATGTAACCTGCATACAATTTAATCCTATCGACAATGATTATTTCATAAGTGGTTCACTTGATGCTAAGGTCAGAATATGGAACATCCCTGAACGCCATGTTGTGGATTGGACTGATATCCATGAAATGGTTACTGCTGTCTGTTATACCCCTGATGGTCAAAGTGCTTTTGTTGGTACACATAAAGGGAGTTGTCGTACCTATAGCACAGAAGATTGCACATTAAGTCAAACAGGCACTATTGAGCTTCGACGCAAGAAGAAATCTCAACTAAGAAAGGTCACTGGTTTTCAGTTTAACCCAAGTAAACCATCAGAGGTGCTCGTTACTTCAGCTGATTCAAGGATCAGAATTTTGGATGGTTCAGAAGTCATTCACAAGTTTAGAGGTTTTAAAAATGCCAACAGCCAAATTGCAGCTTCATTTAGTCCGAATGGGAGATACATTATTAGTGCAAGTGAAGATTCTCAAGTATATGTCTGGAAACATGAAGAGCATGGAAGCGCAAGCATTGGGAAAGGTAGAAATATTATTGTAACCCGATCTCACGAGCACTTCCAATGTAAAGATGTTTCAATAGCAATAGCATGGCCCTGGACCAAAAGGGGTGATCCCCTACCAATGCCAATGAATAAATCTAAAAGGCATTCAAAACATTCTCAGGCATCTTCTAGTTTTAGAGAAGACACCACTTTTGGAACAAACAGTAAGAGAATGTTTCCACCTCTTCCCAAGAAGAGTAATAACCATACAACAGAAAATAACACTTCTTCCCCAAAGGAAGATCTTGCAGCAATTTCACGCACAGAATCTGGATTAGGTTATTCATTTTCAAATAGTAAGAGAATGATGCCACCACCTCCGGTGAAAACTAACTGCCACTCCACAGAAGAAGAAGACCATGATGCAATTTCGCGCACAGATTCAGGAATTGGAGATTCATTTAGTTCAAGCTCATCATCATCAGTTAGGTGTGGTGATTCACCTTCAATATCTGATGCTGCCACTTCATCATGGTCTTCTTCTTATTCATTATCCGAAATTAACCATGGTTCCTCAACAATACATCCTTCAGCATGGGGCTTGGTAATTGTGACAGCTGGGTATGGAGGTGAAATCAAATGTTATCAAAATTTTGGGTTACCCAGAAGGTTGGGTCGGCAACCCCATCTTTTTGGAGGTTATAACAGTTTCTCTCATGGTAACACCTAG 2868 0.4467 MERRKTLTMSWDGLGDVDDDDAFFESYNRLSTAVPHDLASSSEDEDEDFDDPRLSFASAISSAQSRKPRATPQTDPAPDYGIWMAAPASISERRKRLLHGMGLDDNKEFLKATSIKLNHAISRKFEQEQDNPVSLNSTKTSKLPPTTVTVTTCNSSSITEEKRTEPTERTSVPLGLVRSRSESDMDSFSVEKFRKEELIGKASKQRLMRTATDIAFPRKVANNADGNRVGVRDSDETGRSKRKLEESGVRAFFLIKNLDTGKEFIVNEYGENGTWNRLSDLQTGKQLTMEEFEKTVGQSRVVNELMRRANVGRNEGYSRKLSSSSYISRSLRMSKRRGAALLKNIKGVASGFIGEREREAVHVQAQVTEAKNQWVKVRQSGKSHKELSALHLCQELLAHEGCIWTIRFSLDGRFLASGGEDNVIHVWEVQECEVMSLRPDEGNLTPLHPSLLSSVDRNAQTEPSSSPSWSQKKKKGKFGSKRGSLIPEYVHVPDTVFSLSEKPHCSFRGHSDDVLDLSWSKSQLLLSSSMDKTVRLWDLETKTCLKMFAHNDYVTCIQFNPIDNDYFISGSLDAKVRIWNIPERHVVDWTDIHEMVTAVCYTPDGQSAFVGTHKGSCRTYSTEDCTLSQTGTIELRRKKKSQLRKVTGFQFNPSKPSEVLVTSADSRIRILDGSEVIHKFRGFKNANSQIAASFSPNGRYIISASEDSQVYVWKHEEHGSASIGKGRNIIVTRSHEHFQCKDVSIAIAWPWTKRGDPLPMPMNKSKRHSKHSQASSSFREDTTFGTNSKRMFPPLPKKSNNHTTENNTSSPKEDLAAISRTESGLGYSFSNSKRMMPPPPVKTNCHSTEEEDHDAISRTDSGIGDSFSSSSSSSVRCGDSPSISDAATSSWSSSYSLSEINHGSSTIHPSAWGLVIVTAGYGGEIKCYQNFGLPRRLGRQPHLFGGYNSFSHGNT* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0416 955 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 437 IPR001680 GO:0005515
Apr10g0416 955 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 939 - -
Apr10g0416 955 MobiDBLite consensus disorder prediction 128 171 - -
Apr10g0416 955 MobiDBLite consensus disorder prediction 456 473 - -
Apr10g0416 955 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 547 IPR001680 GO:0005515
Apr10g0416 955 ProSitePatterns Trp-Asp (WD) repeats signature. 415 429 IPR019775 -
Apr10g0416 955 MobiDBLite consensus disorder prediction 758 880 - -
Apr10g0416 955 MobiDBLite consensus disorder prediction 128 160 - -
Apr10g0416 955 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 581 IPR001680 GO:0005515
Apr10g0416 955 MobiDBLite consensus disorder prediction 776 816 - -
Apr10g0416 955 ProSiteProfiles Trp-Asp (WD) repeats profile. 693 714 IPR001680 GO:0005515
Apr10g0416 955 SUPERFAMILY WD40 repeat-like 393 717 IPR036322 GO:0005515
Apr10g0416 955 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 581 - -
Apr10g0416 955 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 430 - -
Apr10g0416 955 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 541 - -
Apr10g0416 955 MobiDBLite consensus disorder prediction 845 859 - -
Apr10g0416 955 MobiDBLite consensus disorder prediction 861 880 - -
Apr10g0416 955 ProSitePatterns Trp-Asp (WD) repeats signature. 525 539 IPR019775 -
Apr10g0416 955 MobiDBLite consensus disorder prediction 57 71 - -
Apr10g0416 955 MobiDBLite consensus disorder prediction 456 481 - -
Apr10g0416 955 Pfam WD domain, G-beta repeat 677 714 IPR001680 GO:0005515
Apr10g0416 955 Pfam WD domain, G-beta repeat 395 427 IPR001680 GO:0005515
Apr10g0416 955 Pfam WD domain, G-beta repeat 505 538 IPR001680 GO:0005515
Apr10g0416 955 Pfam WD domain, G-beta repeat 543 580 IPR001680 GO:0005515
Apr10g0416 955 SMART WD40_4 389 428 IPR001680 GO:0005515
Apr10g0416 955 SMART WD40_4 541 580 IPR001680 GO:0005515
Apr10g0416 955 SMART WD40_4 893 929 IPR001680 GO:0005515
Apr10g0416 955 SMART WD40_4 636 672 IPR001680 GO:0005515
Apr10g0416 955 SMART WD40_4 500 538 IPR001680 GO:0005515
Apr10g0416 955 SMART WD40_4 582 621 IPR001680 GO:0005515
Apr10g0416 955 SMART WD40_4 673 714 IPR001680 GO:0005515
Apr10g0416 955 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Apr10g0416 955 PRINTS G protein beta WD-40 repeat signature 525 539 IPR020472 -
Apr10g0416 955 PRINTS G protein beta WD-40 repeat signature 567 581 IPR020472 -
Apr10g0416 955 Gene3D - 379 740 IPR015943 GO:0005515
Apr10g0416 955 MobiDBLite consensus disorder prediction 34 80 - -
Apr10g0416 955 PANTHER WD REPEAT DOMAIN 44 6 939 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0416 Apr-Chr10 10216080 10221056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0416 506 714 Miscellaneous Gene Families AT5G08390 24.186 2.58e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0416 K20241 - gmx:100779364 1280.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0416 10 10216080 10221056 Apr10g0416 10 10216080 10221056 ECH