Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01165 ATGGAACGCCGGAAAACGCTCACGATGAACTGGGACGGCCTCGGTGATGTTGATGATGACGACGCCTTCTTCGAGTCCTACAACCGCCTCTCCACCGCCGCCCCGCTCGACCTCGCTTCTTCTTCCGACGACGATGATGATGAAGACGAATTCGACAACCCCCGCCTCTCCTTCGTCTCCGCCGTCTCCTCTGTTCACTCGCGAAAAAACAGAGCCTCTCCGCCGACCGACCCTGCTCCAGATTACGGCATATGGATGGCGGCCCCCGTGTCAATCACCGAAAGGCGAAAGCGATTGCTCCACGGAATGGGCTTAGACGACGACAAAGAATTCTCCAAGAAAGCCCCGAGCGTCGAGCTCGGCCACGAAGTTTCAAAGAAGACCGACCCCTTTCCGTCTTCTAATTCCTCTGAGAAATCAACACTTTTGGCTACTTCCGTGCCTGTTACCGTCACACCTTCTGATTCCTCTGTTTTGGCCGAGAAAAAAACAGAGCACTCCTCTGTTCACTTGGTTCTGGTTCGTTCTCGCTCTGAGGGGGACATCGATTTGTTCTCCATTGAGAGGTCAAGAAAGGAGAATTTCATCGGGAAGGCGTCGAAGCAGCGGCTTACAAGAACTGCCACGATAGCCTTCCCTCGCGGACGGAACGGGACTGGGACCGGAAACAGAGCTGTGGTGAGAGATTCCGATAATGCAGCAGCACAATCAAAGCGGAGCGTTGCGATGGAGGATTCGGGAGTGGGAGCATTTTTCTTGATTAAAAATCTGGACACCGGGAAGGAGTTTATTGTGAACGAGTATGGCGAAAACGGAGCGTGGAACCGGCTGAGTGATTTGCAGACAGGGAAGCAGTTAACGATGGAGGAGTTCGAGAGGACGGTGGGGAAGTCACACGTGGTGAATGAGCTTATGAGGCGTGGGAGGAGGAACGACTCGCGGAATAAACTGTCTTCGAGTTCTTACATTTCGAGGAGTCTGAGGATGAGCAAGAGGAGGGGCGCGGCGTTGCTGAAGAACATAAAGGGCGTGGCGAGTGGGATCATCGGCGAGCGGGAGCCGGTGCATCCGGTGCAGCAGCAGCCGGTGACGACAACGACGACGACGGAGGCGAAGAATCAGTGGGTGCGAGTTCGGCAGAGTGGGAAGTCGCACAAGGAGTTCTCTGCTTTGCATCTGTGTCAGGAATTTCAGGCTCACGAGGGGTGCGTTTGGACGATCAAGTTCAGCATGGAGGGGCGGTATCTGGCGAGTGGCGGAGAGGACAGGGTGATTCACGTGTGGGAAGTGCAGGAGTGTGAGGTCATGTCTTTGAGGCTCGACGAGGGAGGTCTCACTCCTATTCACCCCTCCTTGCTTGCATCGTCCAACGAGTCTCCACTTTTGTCTAGTGAGAAGAAGAAGAAGGGGAAGTTCGGAAGCAAAAGAGGCACAGCCATTCCTGAATATGTTCATGTTCCTGAAACTGTCTTCTCACTTTCCGACAAGCCATTTTGCTCTTTTCATGGACATTTGGATGATGTTTTGGATTTGTCATGGTCTAAATCTCAGTTACTTCTCTCATCTTCAATGGATAAAACGGTCAGATTATGGGATTTGGAAACTAAGACTTGCTTGAACATGTTTGCCCATAATGACTATGTAACCTGCATACAATTCAATCCTATCCACGATGATTATTTCATAAGTGGTTCGCTCGATGCTAAGGTCAGAATATGGAACATCCCTGAACGCCATGTCGTGGATTGGACTGATATCCATGAAATGGTTACTGCAGTGTCCTATACACCTGATGGTCAGGGTGCTCTAGTTGGTACCCATAAAGGGGGTTGTCGTACATATAGCACAGAAGATTGCATACTAACTCAAACAGGCACAATTGAGATTCGACACAAGAAGAAATCCCAGCTAAGAAAGGTCACTGGTTTCCAGTTTGCTCCAGGCAAACCATCAGAAGTTCTTGTCACTTCAGCCGATTCCAGGATAAGAATTTTGGATGGTTCAGAGGTTGTTCAAAAGTACAGAGGTTTTCGAAATGCAAACAGCCAAATTGCAGCTTCATTTAGTCCAGATGGGAGATACATTATCAGTGCTAGTGAGGATTCTCAAGTATATATCTGGAAGCATGAAGAACATAGAGGTGCAGGCAGTGGAAAAGGTAGAAATGTGCTAGTTACCCGTTCTCACGAACACTTCCAATGTAAAGAGGTTTCAGTAGCAATAACATGGCCTTGTACCATAAGAGGTGATCCTCCGCTAGTGCCAGTGCATCATTCCAAAAGACATTCAAAACGTTCTCAGGCACCTTCTAATTCTGGAGAAGACACAGCATCGCCATCTTCTGCAAACAGTAAGAGATCGCTTCCACCCCTTCCCAAGAAGAGTAACAACCATGCCACAGAAGGTGCTACAAATTCACCAAGGGAAGACCCTGCAGCAATTTTGCACACAGAATCTGCACTTGGTGATTCTTTTGCAAACAGTAAGAGAATGATGCCACGGTCTCCATTGAAAGATAACTGCCACACCACAGAGGAAGACGACCTTGAAGCAATTTCGCGAACTGATTCAGGTTTCAGTGATTCATTTAGTTCTGGCTCGTCCTCGATTAGGTATGGAGATTCACCTTCTTCAAGCGCATCATGGTCCTCCTCTTATTCATTACTGGACAGTAGCCATGTTTCCTCCACAGTTCTTCCTTCAGCTTGGGGCTTGGTAATCGTGACAGCCGGGTTTGGAGGTGAGATCAAATGTTATCAAAATTTTGGGTTGCCTAGAAGGATGGGCCGGCAACCCCATCTTTTTGGAGGCTATAACAGTTTTTCTCATGGCAACACCTAG 2841 0.4917 MERRKTLTMNWDGLGDVDDDDAFFESYNRLSTAAPLDLASSSDDDDDEDEFDNPRLSFVSAVSSVHSRKNRASPPTDPAPDYGIWMAAPVSITERRKRLLHGMGLDDDKEFSKKAPSVELGHEVSKKTDPFPSSNSSEKSTLLATSVPVTVTPSDSSVLAEKKTEHSSVHLVLVRSRSEGDIDLFSIERSRKENFIGKASKQRLTRTATIAFPRGRNGTGTGNRAVVRDSDNAAAQSKRSVAMEDSGVGAFFLIKNLDTGKEFIVNEYGENGAWNRLSDLQTGKQLTMEEFERTVGKSHVVNELMRRGRRNDSRNKLSSSSYISRSLRMSKRRGAALLKNIKGVASGIIGEREPVHPVQQQPVTTTTTTEAKNQWVRVRQSGKSHKEFSALHLCQEFQAHEGCVWTIKFSMEGRYLASGGEDRVIHVWEVQECEVMSLRLDEGGLTPIHPSLLASSNESPLLSSEKKKKGKFGSKRGTAIPEYVHVPETVFSLSDKPFCSFHGHLDDVLDLSWSKSQLLLSSSMDKTVRLWDLETKTCLNMFAHNDYVTCIQFNPIHDDYFISGSLDAKVRIWNIPERHVVDWTDIHEMVTAVSYTPDGQGALVGTHKGGCRTYSTEDCILTQTGTIEIRHKKKSQLRKVTGFQFAPGKPSEVLVTSADSRIRILDGSEVVQKYRGFRNANSQIAASFSPDGRYIISASEDSQVYIWKHEEHRGAGSGKGRNVLVTRSHEHFQCKEVSVAITWPCTIRGDPPLVPVHHSKRHSKRSQAPSNSGEDTASPSSANSKRSLPPLPKKSNNHATEGATNSPREDPAAILHTESALGDSFANSKRMMPRSPLKDNCHTTEEDDLEAISRTDSGFSDSFSSGSSSIRYGDSPSSSASWSSSYSLLDSSHVSSTVLPSAWGLVIVTAGFGGEIKCYQNFGLPRRMGRQPHLFGGYNSFSHGNT 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01165 946 PRINTS G protein beta WD-40 repeat signature 416 430 IPR020472 -
Pumo7g01165 946 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Pumo7g01165 946 PRINTS G protein beta WD-40 repeat signature 519 533 IPR020472 -
Pumo7g01165 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 575 - -
Pumo7g01165 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 438 IPR001680 GO:0005515
Pumo7g01165 946 MobiDBLite consensus disorder prediction 108 126 - -
Pumo7g01165 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 575 IPR001680 GO:0005515
Pumo7g01165 946 Gene3D - 477 745 IPR015943 GO:0005515
Pumo7g01165 946 MobiDBLite consensus disorder prediction 108 140 - -
Pumo7g01165 946 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Pumo7g01165 946 MobiDBLite consensus disorder prediction 823 876 - -
Pumo7g01165 946 SMART WD40_4 390 429 IPR001680 GO:0005515
Pumo7g01165 946 SMART WD40_4 535 574 IPR001680 GO:0005515
Pumo7g01165 946 SMART WD40_4 630 666 IPR001680 GO:0005515
Pumo7g01165 946 SMART WD40_4 576 615 IPR001680 GO:0005515
Pumo7g01165 946 SMART WD40_4 667 708 IPR001680 GO:0005515
Pumo7g01165 946 SMART WD40_4 494 532 IPR001680 GO:0005515
Pumo7g01165 946 MobiDBLite consensus disorder prediction 769 804 - -
Pumo7g01165 946 Gene3D - 354 476 IPR015943 GO:0005515
Pumo7g01165 946 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Pumo7g01165 946 MobiDBLite consensus disorder prediction 754 810 - -
Pumo7g01165 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 541 IPR001680 GO:0005515
Pumo7g01165 946 SUPERFAMILY WD40 repeat-like 391 916 IPR036322 GO:0005515
Pumo7g01165 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 535 - -
Pumo7g01165 946 MobiDBLite consensus disorder prediction 34 53 - -
Pumo7g01165 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 431 - -
Pumo7g01165 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 708 IPR001680 GO:0005515
Pumo7g01165 946 PANTHER WD REPEAT DOMAIN 44 18 925 IPR040324 -
Pumo7g01165 946 MobiDBLite consensus disorder prediction 835 854 - -
Pumo7g01165 946 FunFam WD repeat-containing protein 44 482 749 - -
Pumo7g01165 946 Pfam WD domain, G-beta repeat 538 574 IPR001680 GO:0005515
Pumo7g01165 946 Pfam WD domain, G-beta repeat 497 532 IPR001680 GO:0005515
Pumo7g01165 946 Pfam WD domain, G-beta repeat 395 428 IPR001680 GO:0005515
Pumo7g01165 946 Pfam WD domain, G-beta repeat 673 708 IPR001680 GO:0005515
Pumo7g01165 946 MobiDBLite consensus disorder prediction 855 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01165 Pumo-Chr7 26143606 26148598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01165 498 708 Miscellaneous Gene Families AT5G08390 23.963 4.08e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01165 K20241 - gmx:100779364 1418.68