Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1776 ATGGAACGCCGGAAAATGTTAACCATGAATTGGGATGGTCTCGGCGACAATGACGACGAAGACGAGAGTTTTTTTGAGACCCGCGACCGTACCTCCTCCGCCGATCCGCTTGATTTGGCTTCTTCATCCGATGAAGAAGATGGGTTTGAAGATAGCCGCACGTCCTTCTCTTCCACTATCTCCACCATCCCTTCTGAGACATTCAAAACTTTCTCTCAAACTGGGGCTGTCACCGTAGCCCCTGACTACGAGATGTGGATGGCTTCCCCTGGATCGATCACAGAACGCAGAAAACGATTACTTTTTGGTATGGGTCTAGATGAAAATAAAGAGCTTTTGAGGGTCCAAAGTGCAGTGCTTGATCGAGCTATTTCGAAGAAGTTCGAAAATGGTCAAAATCTCAATTCTTCCCCTGCTTCGACCCCTGCTACTTCTACTACCACTAACGATGCTGCATCAGAGGAACCAAAAACAGAGCGTTCCCTTATCCCATTTGTTCTGGTTCGATCACGCTCCGATGGTGATATCGATTTGGGTGCCATGAACAAATGCAGGAAAGATGAATTTATAGGTAACATCTCGAAGCAACGCCTCACAAGAACCGCGACGGAAATAGCCGTTCCTCGATCTCGGATATGTCCGTACCCAGATGGAAGCAGAGTTGTGGCTAAAGACGCCGTCCGTGGCCGCGTTGATGGGGCGGGGCAATCGAACCAGCACGGCAGGAAATTGTCGTCGGTGAAGACGAAAAAGGTGGAGGCTTTTTTCTTGATAAAAAATTTGGATACCGGGAAGGAGTTCATCGTCAACGAGTACGGCGAAGATGGGATGTGGAATAGGCTAAGCGATTTGCAGACAGGGAAGAAGCTAACAATGGAGGAGTTCGAGAAGACTGTTGGACATTCCCCTGTGGTTAAAGAGTTAATGAGCAGAGAAAAAGTTGGAAGAAGTAGTAGCGATGGTTGTGGCTACGATAGGAAACTCAGTACAAATTCTTACTTTTCAAAGAGCTTGAGGATGAGCAAGAGAACAGGGGCTGCTTTGTTGAAGAACATAAAGGGCGTGGCAAGTGGGTTCATTGGAGATAGAGAGAGGGAGGATTCAGTGAAAGCACCCATACCACAAGGGATGGATTCGAAACCCAGGAAGAACGAATGGGTAAGAGTTAGGCAAAGTGGGAAGTCGCATAGAGAGCTTTCTGCTCTGCATTTGTGCCAAGAGTTTCAAGCTCATGAAGGGTGCATTTGGAGCATTAAGTTCAGTGGGGATGGGCAATATCTGGCTAGTGCTGGAGAGGATAGAGTAATTCACGTCTGGGAAGTTCAGGAGTGTGAGGTTATGTCGTTGAAACCAGAGGAAGGGAATCTTACGCCGATTCATCCTTCGCTACTTGGATCGCAGGATCGAACCGGGATCGCAGATTCTCCGCCATCGGTGGGTGAGAAGAAGAAGAAGGGAAAGTTTGGAAGCAAAAGAGGAAATGTCATTCCGGATTATGTTCATGTCCCTGAAACCGTGTTCTCGCTCTCTGACAAACCTTATTGCTCTTTCCAAGGTCATTCCGATGATGTATTGGATCTGTCTTGGTCCAAATCTCAGTTACTGCTTTCTTCTTCAATGGATAAAACAGTGAGATTATGGGACTTGGAAACTAAGGGGTGCTTGAAGATGTTTGCCCACAATGATTATGTAACCTGCATACAGTTCAATCCTATAGATGATGATTATTTTATAAGTGGCTCCCTTGATGCTAAGGTCAGAATATGGAACATCCCAGAACGACAAGTCGTTGATTGGATCGATACCCATGAAATGGTCACTGCTATTTCTTACACCCCTAACGGTCAAGCTGCTCTTGTTGGTACACAAAAAGGGAGTTGTCGCATGTATAGCACAAAAGATTGCAGATTAAGTCAAATAGGCAGAATTGAGCTTCGGAACAAGAAGAAATCCCAATTAAGAAAGGTCACTGGTTTTGAGTTTGTCCCAGGTAATCCATCAGAAGTGCTTGTTACTTCAGCTGATTCCAGGATAAGAATTGTAGATGGCTCAAAAGTTATTCACAAGTTTGTAGGTTTTAGAAATGCAGACAGCCAATTTGCAGCTTCATTTAGTCCTAATGGAAAATATGTGATAACTGCAAGCGAAGATTCTCAAGTGTATGTGTGGAGACATGAAGAGGCTCGAAATGGAAGCTCTGGGAAAGCTAGACACCTAAGTGTTACTCGATCCCACGAGCACTTCCAGTGTAAAGATGTCTCGGTAGCAATACCATGGCCTTGTGCCATCAAGGGTGACCCTCCAGTAGGGTCAGTGCACCATTCCAAAAGGCACTCAAAACGCTTAGCAGTATCATCACCTTCTAATTCTGGGTCACCCAACAAAATTGACGACACCAGCAATAAGAGAACGTTGCCCCCTCTTCCCAAGAAAAGAAACAACCATGGTGCCACGGAAAGTGTCTCAGCTTCCCCAGAAGAAGATCATGAAGACCGTTCAGCGATTTCACGCACAGATTCTGGAATTGGCGATTCCTTTGCGAATAATAGTAGTAAGAAAAAGTGGGCTCCTTTTTTTAAGAAAAATGGCCGCCACCACCACCATAGCGCCACAGAAAATAGCCTCTCACCCCTAGCTCCTCCCACAGAGGAAGAAGACCCTGAAGCACTCTCACGCACATATTCTGGGATTGGAGATTCGTTTTCTTCAGCTGGTTCTGCATCGATGAGGTTTGGTGATTCATCACCTTCTATATCTCCTGCTGCAACCCCATCATCTGCTTCTTGGTCCTCCTCTTGGTCACTACTGTTTGAAAGTAGCCATGCCACCCCAGCTGTTCAACCTTCAGCTTGGGGATTGGTGATTGTCACAGCTGGGTTTGGAGGTGAAATCAGACCTGAAGTTACATATAGCATAGCTTAG 2922 0.4603 MERRKMLTMNWDGLGDNDDEDESFFETRDRTSSADPLDLASSSDEEDGFEDSRTSFSSTISTIPSETFKTFSQTGAVTVAPDYEMWMASPGSITERRKRLLFGMGLDENKELLRVQSAVLDRAISKKFENGQNLNSSPASTPATSTTTNDAASEEPKTERSLIPFVLVRSRSDGDIDLGAMNKCRKDEFIGNISKQRLTRTATEIAVPRSRICPYPDGSRVVAKDAVRGRVDGAGQSNQHGRKLSSVKTKKVEAFFLIKNLDTGKEFIVNEYGEDGMWNRLSDLQTGKKLTMEEFEKTVGHSPVVKELMSREKVGRSSSDGCGYDRKLSTNSYFSKSLRMSKRTGAALLKNIKGVASGFIGDREREDSVKAPIPQGMDSKPRKNEWVRVRQSGKSHRELSALHLCQEFQAHEGCIWSIKFSGDGQYLASAGEDRVIHVWEVQECEVMSLKPEEGNLTPIHPSLLGSQDRTGIADSPPSVGEKKKKGKFGSKRGNVIPDYVHVPETVFSLSDKPYCSFQGHSDDVLDLSWSKSQLLLSSSMDKTVRLWDLETKGCLKMFAHNDYVTCIQFNPIDDDYFISGSLDAKVRIWNIPERQVVDWIDTHEMVTAISYTPNGQAALVGTQKGSCRMYSTKDCRLSQIGRIELRNKKKSQLRKVTGFEFVPGNPSEVLVTSADSRIRIVDGSKVIHKFVGFRNADSQFAASFSPNGKYVITASEDSQVYVWRHEEARNGSSGKARHLSVTRSHEHFQCKDVSVAIPWPCAIKGDPPVGSVHHSKRHSKRLAVSSPSNSGSPNKIDDTSNKRTLPPLPKKRNNHGATESVSASPEEDHEDRSAISRTDSGIGDSFANNSSKKKWAPFFKKNGRHHHHSATENSLSPLAPPTEEEDPEALSRTYSGIGDSFSSAGSASMRFGDSSPSISPAATPSSASWSSSWSLLFESSHATPAVQPSAWGLVIVTAGFGGEIRPEVTYSIA 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1776 973 Gene3D - 387 462 IPR015943 GO:0005515
Glsi07g1776 973 SMART WD40_4 646 682 IPR001680 GO:0005515
Glsi07g1776 973 SMART WD40_4 593 631 IPR001680 GO:0005515
Glsi07g1776 973 SMART WD40_4 401 440 IPR001680 GO:0005515
Glsi07g1776 973 SMART WD40_4 510 548 IPR001680 GO:0005515
Glsi07g1776 973 SMART WD40_4 551 590 IPR001680 GO:0005515
Glsi07g1776 973 SMART WD40_4 683 724 IPR001680 GO:0005515
Glsi07g1776 973 MobiDBLite consensus disorder prediction 863 897 - -
Glsi07g1776 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 517 557 IPR001680 GO:0005515
Glsi07g1776 973 MobiDBLite consensus disorder prediction 130 152 - -
Glsi07g1776 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 703 723 IPR001680 GO:0005515
Glsi07g1776 973 Pfam WD domain, G-beta repeat 515 548 IPR001680 GO:0005515
Glsi07g1776 973 Pfam WD domain, G-beta repeat 406 439 IPR001680 GO:0005515
Glsi07g1776 973 Pfam WD domain, G-beta repeat 554 590 IPR001680 GO:0005515
Glsi07g1776 973 Pfam WD domain, G-beta repeat 702 723 IPR001680 GO:0005515
Glsi07g1776 973 ProSitePatterns Trp-Asp (WD) repeats signature. 427 441 IPR019775 -
Glsi07g1776 973 Gene3D - 496 760 IPR015943 GO:0005515
Glsi07g1776 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 449 IPR001680 GO:0005515
Glsi07g1776 973 MobiDBLite consensus disorder prediction 822 837 - -
Glsi07g1776 973 MobiDBLite consensus disorder prediction 768 848 - -
Glsi07g1776 973 MobiDBLite consensus disorder prediction 1 57 - -
Glsi07g1776 973 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 517 551 - -
Glsi07g1776 973 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Glsi07g1776 973 PANTHER WD REPEAT DOMAIN 44 17 965 IPR040324 -
Glsi07g1776 973 MobiDBLite consensus disorder prediction 459 490 - -
Glsi07g1776 973 ProSitePatterns Trp-Asp (WD) repeats signature. 535 549 IPR019775 -
Glsi07g1776 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 591 IPR001680 GO:0005515
Glsi07g1776 973 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 557 591 - -
Glsi07g1776 973 SUPERFAMILY WD40 repeat-like 402 727 IPR036322 GO:0005515
Glsi07g1776 973 MobiDBLite consensus disorder prediction 782 801 - -
Glsi07g1776 973 FunFam WD repeat-containing protein 44 498 765 - -
Glsi07g1776 973 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Glsi07g1776 973 PRINTS G protein beta WD-40 repeat signature 535 549 IPR020472 -
Glsi07g1776 973 PRINTS G protein beta WD-40 repeat signature 577 591 IPR020472 -
Glsi07g1776 973 MobiDBLite consensus disorder prediction 130 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1776 Glsi-ChrGlsi07 59301527 59307907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1776 516 809 Miscellaneous Gene Families AT5G08390 22.697 1.03e-11 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1736 06 64207200 64214581 Glsi07g1776 07 59301527 59307907 CCT