Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01441 ATGTGGAAGCTGAAGATCGCGGAGGGAGAGACTCCATGGCTTCGGACACTCAACAATCATTGTGGAAGACAGGTCTGGGAGTTCGATCCTACGCTTCAATCACCGCAAAAACTCCTCCAAATCGAAGAGGCTCGCCACAATTTCTCCCAGAATCGCTTCACTCAGAAACAGAGCTCCGATTTACTTATGCGCATGCAGTTTGCGGAAGAGAATCCGATGCATGAAATCTTACCCAAAGTCGAAGTGCAAGACGCGGGAGATGTAACCGAAGAGGTTGTGACTAGAACGTTAAGAAGAGCAACGAGTTTCCTTTCAACTCTTCAGAGTGACGATGGACACTGGCCAGGTGATTACGGAGGTCCCATGTTTATGATTCCTTCCTTGGTAATTGCTCTGTATATCAGTGGAGCACTGAATTCAGTCTTAACAGAAGAACATAGAAAGGAAATTAGGCGTTTCATCTATAATCATCAAAACGAGGATGGTGGGTGGGGTTTGCATATTGAAGGTTCAAGCACAATGTTTGGGTCTGTTTTGAGTTATGTTGTTCTGAGATTGCTTGGTGAAGGAGGCAGTGGTGGAAAAGGGAAAATGGAGAAGGCACTTGTGTGGATCCGAAAGCATGGTGGGGCTACTTTTATCACATCGTGGGGGAAGACGTGGCTTTCAGTACTTGGAGTTTATGAATGGTCAGGAAATAATCCCATGCCCCCTGAGACATGGCTCCTTCCATATATGCTTCCATTTCATCCAGGCAGGATGTGGAATCACTGCCGGATGGTATATTTGCCAATGTCGTATTTATATGCGAAGAGGTTTGTTGGTCCAATCACACCTGTCATTTTATCTTTGAGAAAAGAACTTTACACCATACCATATCGACATATAAACTGGGATCAAGCTCGTAATTTGTGTGCAAAGGAAGACTTGTACTACCCTCACTCACTTGTGCAGGATATTCTCTGGGCTACCCTACACAACATCCTTGAGCCTATTTTGATGCATTTTCCAGGCAATAAGTTGAGAGAAAAGGCTCTTAGGAATGTAATGGAGCGTATACACTATGAAGATGAGACTACTCGTTATATTTGCTTAGGTCCTGTAAACAAGGTGTTAAATATGCTGTGTTGTTGGGTTGAAGATCCAAATTCTGAGTCCTTCAAGTTGCATCTTCCAAGGATTCATGATTATCTATGGATTGCTGAAGATGGCCTCAAAATGAAGGGATACAATGGATGTCAACTATGGGATACTGCATTCATTGTCCAAGCAATTATTTCAACTAACCTAGCAGAGGAATACGGTCCAACCCTAAGGAAAGCTCATGCATTCATCAAGAATTCGCAGATTTTGGAAGACTGTCCAGGTGATCCAAATAAATGGTTTCGTCATATTTCAAAAGGTGGTTGGCCTTTTTCCACTGCAGATAATGGATGGATAACTTCTGATTGCACTGCTGAAGCACTAAAAGCTGTTCTCTTGCTGTCCAACATAGCACCAGGGATTGTTGGTGAGGCATTGGATGCAGAGCGATTATACGATGCAGTAAATATCATTCTCTCGTTACAGAATGAAGATGGCGGTTTTCCGACGTATGAACTCACACGATCTTATAACTGGATGGAGATAATGAATCCTTCTGAAACATTTGGAGACATAATTATCGATTATCCTTACGTGGAATGTACCTCAGCAGCTATTGAAGCTTTGACATTATTTAGGAAATGTTATCCTGGGCATCGTGGACAAGAAATACAAGTCTGTATCGAAAAAGCTGTTGGCTTTCTTCAAAAAATACAAGCTTCAGATGGCTCATGGTATGGTTCGTGGGGAATTTGCTTCACTTATGGAACATGGTTTGGAGTAAAAGGGTTGGTCTCGGGTGGAAGGAGTTTCAGTAACTGCTCAAACATTCGTAAAGCTTGTGACTTTTTGCTGTCCAAACAACTCCCTTCTGGTGGCTGGGGAGAGAGTTATCTGTCCTGTCAAAACAAGGTATATACAAATCTGGAAGGTAACAAGGGTCATGTAGTAAACACTGGGTGGGCTATGCTGGCTCTCATTTATGCTGGACAGGGTGAGAGAGATCCCACACCACTGCACAAAGCTGCTGTGTACCTGATAAATTCTCAGATGGAGAATGGTGACTATCCACAACAGCCTACAGAAACATATTTCCGATATGGGCCTTAG 2193 0.4314 MWKLKIAEGETPWLRTLNNHCGRQVWEFDPTLQSPQKLLQIEEARHNFSQNRFTQKQSSDLLMRMQFAEENPMHEILPKVEVQDAGDVTEEVVTRTLRRATSFLSTLQSDDGHWPGDYGGPMFMIPSLVIALYISGALNSVLTEEHRKEIRRFIYNHQNEDGGWGLHIEGSSTMFGSVLSYVVLRLLGEGGSGGKGKMEKALVWIRKHGGATFITSWGKTWLSVLGVYEWSGNNPMPPETWLLPYMLPFHPGRMWNHCRMVYLPMSYLYAKRFVGPITPVILSLRKELYTIPYRHINWDQARNLCAKEDLYYPHSLVQDILWATLHNILEPILMHFPGNKLREKALRNVMERIHYEDETTRYICLGPVNKVLNMLCCWVEDPNSESFKLHLPRIHDYLWIAEDGLKMKGYNGCQLWDTAFIVQAIISTNLAEEYGPTLRKAHAFIKNSQILEDCPGDPNKWFRHISKGGWPFSTADNGWITSDCTAEALKAVLLLSNIAPGIVGEALDAERLYDAVNIILSLQNEDGGFPTYELTRSYNWMEIMNPSETFGDIIIDYPYVECTSAAIEALTLFRKCYPGHRGQEIQVCIEKAVGFLQKIQASDGSWYGSWGICFTYGTWFGVKGLVSGGRSFSNCSNIRKACDFLLSKQLPSGGWGESYLSCQNKVYTNLEGNKGHVVNTGWAMLALIYAGQGERDPTPLHKAAVYLINSQMENGDYPQQPTETYFRYGP 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01441 730 NCBIfam squalene/oxidosqualene cyclases 96 726 IPR018333 GO:0005811|GO:0016104|GO:0016866
Spst4g01441 730 Pfam Squalene-hopene cyclase N-terminal domain 98 399 IPR032697 -
Spst4g01441 730 ProSitePatterns Terpene synthases signature. 603 617 IPR002365 GO:0016866
Spst4g01441 730 Gene3D - 118 411 - -
Spst4g01441 730 PANTHER TERPENE CYCLASE/MUTASE FAMILY MEMBER 1 726 IPR018333 GO:0005811|GO:0016104|GO:0016866
Spst4g01441 730 Pfam Squalene-hopene cyclase C-terminal domain 415 720 IPR032696 -
Spst4g01441 730 SFLD Prenyltransferase Like 2 66 724 IPR018333 GO:0005811|GO:0016104|GO:0016866
Spst4g01441 730 FunFam Terpene cyclase/mutase family member 488 727 - -
Spst4g01441 730 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 341 723 IPR008930 -
Spst4g01441 730 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 120 407 IPR008930 -
Spst4g01441 730 CDD SQCY_1 97 723 IPR018333 GO:0005811|GO:0016104|GO:0016866
Spst4g01441 730 Gene3D - 488 723 - -
Spst4g01441 730 FunFam Terpene cyclase/mutase family member 118 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01441 Spst-Chr4 52660443 52670373 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01441 K01853 - gmx:548054 1229.16