Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1057 ATGGCCCCAATTCAGCGCCGGAAATCGCTCACATTGAACTGGGACGGTCTCCGAGACAACGATGAAGATGACGATAACTTCTTCGAGACGCGCGAACGCATGTCCTCCGCCACTCCGATCGATCTGGAAGCTTCTTCCTCGGACGAAGACGACGGCTTTGAAGAAAGCCGCATGTCGTTTAGCACCAACATCTCTCCCAACCAATCCGAGCGAGTCAAACCTGTTCCGGCGCCCTTCTCCGCCTTGGGCTCCGAATACGACATGTGGATGGCGTCTCCAGGATCAATTACGGAGCGAAGAAAACGATTGCTTCTCGGTATGGGCCTGGACGAGAACAAAGAGGTCCTAAGAATCACAAGCATGGCTCTGGATCGCGCCATTTCGAAAAAGTTCGAAAATGACCAAACCGATTGTTCACCTTCAACGCCAACAAGCACAAGTAAATCTTCTCCTTCTCCTCCTCATTCATCTTCTTCCACTGTAAGTTCACAATCAGAGCAAAAACAACATAGAAGATCGAGAAAGCCGTCCATCATCCCCTTCATTCTGGGTGGCTCGCGATCTGAAGGAGACATCGATTCCTTCTCGATGCCAATATCCAGAAAAGAGGAATTCATCGGTAAAATTTCCAAGCAACGCCTCACGAGAACCTCATCAGACTTGACATTTTCTCGCGGCGGACATCGTCCGCACCAAAATGAATCCCCAGCTGCAAGGAAAGGTAAGGAAAGGCCGGCGCGGTCGCTGCGGCAGCACGGCTCGAAGATGACGTCGGCGAAGTCTAACTGGGGACTAGGGGCTTTCTTCTTGATCAAGAATTTGGACACAGGAAAAGAGTTCATCGTCAACGAGTCAAGAGAAGACGGGACGTGGAACAGGCTAAGCGATCTGCAAACAGGGAAGAAATTAACAATGGAGGAATTCGAACTACACCTTGGGCATTCCCAGATGGTGAAAGAGCTAATGAGTCGTGACAAAGTCACCAGAAGTACCAGCGACAGTCTTGGATACGAGAGAAAACTCACAACACAACATTCATATTTCTCGAAGAGCTTAAGGAAAAGCAAAAGAACAGGGGCTGCTCTGTTGAAGAACATAAAGGGAGTGGCGTCTGGGATCATCGGCGAGAGAGAAAGAGATGAACCACATAAATCGTCATCATTGTCAGCACAATTTTCAACTTCTGACCAGAAGGTCACGAAGAACGAACAATGGGTGAGAGTAAGACAGACTGGGAAATCCATGAAGGAGCTCTCAGCTCTGCATCTGTGTCAGGAATTTCAAGCTCATGAAGGATGTATCTGGACGATCAGATTCAGTAATGATGGGCATTACATGGCGAGTTCAGGGGAAGACAAGGTGATTCACGTATGGGAAGTTCAAGAATTCGAAGTGACATCGATGAAGCCAGAGGAAGGAAGTATCACTCCGATTCATCCATCATTACTTGGATCATCACCAGACCGAAATGGGAAGGAAGAATGGAATGAGAAGAAGAAGAAAGGGAAACATGGATACAAGAGAGGAGGAACTAGTTTTACGATTCCTGATTATGTTCATGTTCCTGAAACTGTGTTCTCTTTCGCTGATAAACCTTATTGCTCTTTCCATGGCCATTCCGACGACGTTTTGGACCTGTCTTGGTCTAGATCTCAGTTACTGCTATCATCGTCAATGGATAAAACAGTGAGATTATGGGACATGGAAAGCAGGGCGTGCTTGAAGGTGTTCACACACAGTGATTATGTAACGTGCGTGCAGTTCAATCCAATGGACGAAGACTATTTCATAAGTGGGTGTTTGGATGCTAAGGTGAGAATATGGAACGTACCTCAACGCTCTGTTGTGGATTGGATCGATACACACGAAATGGTCACTGCTATTTCTTACACCCCTGACGCTCAAGCTGCTTTTGTTGGTACTCATAAAGGAAGTTGTCGCATGTATAGCACAGAAGATTGCAAAATGAGTCAAATAGGCACAGTTGAGCTTCGGCGAAAGAAGAAATCTCATTTAAGAAAGGTGACTGGTTTTCAGTTTACTCCAAGTAGTCCATCAGAAGTGCTTGTTACGTCAGCTGATTCCAGGATCAGAATTGTAGAAGATTCCAGAGTTGTACAAAAGTTTGTAGGTTTTCGAAATGCAAACAGCCAAATTTCAGGTTCATTTAGTCCAGATGGAAGATACGTGATAAGTGCAAGTGAAGATTCTCAGGTATTTGTGTGGAAGAATGAAGGCCATGCAAAAGCCAGAAACCTGATTCTGACTCAATCTCACGAGCAATTCCAATGCAGAGACGTGTCCATAGCAATCCCATGGCCTCGTGTCATCAAAGGTGACCCTCCAGTAGGACCAGCCCTGCACTCAAAGAGACACTCAAAACATTCTTCAGCCCCTACTCCAGCTTCTTCTTCATGTGGATCACCACTTCATCATTCTTATAACAACAATAAGGGAACAATTTTGCCTCCTCTTCCCAAAAAGAACAACAAACATAACCATGGCTCTAATACTGCTTCTCCTTTCCGGGAAGACGAACCCTCGGCCATTTCACGTACCTTGTCTGGGATTGGAGCGATTTCGTTCACTCATAGTGGTAGTAAGAGCAGGTGGTCCCCATTTTCTAGGAAGAGTAGTAGTAATAATGGTCACCATGTCATGGAAGAGGAAGACCCTGCAGCCATATCTCGCACCAGTTCTGGATATGGGGATTCCTTTTCTTCTTCTGAGTCTTCCATGAGATATGGCGACTCGCCTTCCGTGTCTGCTTCTGGTAGATCATCTTCTTCTGCATCTTGGTCAATGCAGTTTGATAATGGCCATGCCAACTCAGCTTGGGGGTTGGTGATTGTAACAGCTGGGTTTGGAGGTGAAATCAGGTGTTATCAAAATTTCGGGTTACCTAGAAAGGTGTGA 2916 0.4619 MAPIQRRKSLTLNWDGLRDNDEDDDNFFETRERMSSATPIDLEASSSDEDDGFEESRMSFSTNISPNQSERVKPVPAPFSALGSEYDMWMASPGSITERRKRLLLGMGLDENKEVLRITSMALDRAISKKFENDQTDCSPSTPTSTSKSSPSPPHSSSSTVSSQSEQKQHRRSRKPSIIPFILGGSRSEGDIDSFSMPISRKEEFIGKISKQRLTRTSSDLTFSRGGHRPHQNESPAARKGKERPARSLRQHGSKMTSAKSNWGLGAFFLIKNLDTGKEFIVNESREDGTWNRLSDLQTGKKLTMEEFELHLGHSQMVKELMSRDKVTRSTSDSLGYERKLTTQHSYFSKSLRKSKRTGAALLKNIKGVASGIIGERERDEPHKSSSLSAQFSTSDQKVTKNEQWVRVRQTGKSMKELSALHLCQEFQAHEGCIWTIRFSNDGHYMASSGEDKVIHVWEVQEFEVTSMKPEEGSITPIHPSLLGSSPDRNGKEEWNEKKKKGKHGYKRGGTSFTIPDYVHVPETVFSFADKPYCSFHGHSDDVLDLSWSRSQLLLSSSMDKTVRLWDMESRACLKVFTHSDYVTCVQFNPMDEDYFISGCLDAKVRIWNVPQRSVVDWIDTHEMVTAISYTPDAQAAFVGTHKGSCRMYSTEDCKMSQIGTVELRRKKKSHLRKVTGFQFTPSSPSEVLVTSADSRIRIVEDSRVVQKFVGFRNANSQISGSFSPDGRYVISASEDSQVFVWKNEGHAKARNLILTQSHEQFQCRDVSIAIPWPRVIKGDPPVGPALHSKRHSKHSSAPTPASSSCGSPLHHSYNNNKGTILPPLPKKNNKHNHGSNTASPFREDEPSAISRTLSGIGAISFTHSGSKSRWSPFSRKSSSNNGHHVMEEEDPAAISRTSSGYGDSFSSSESSMRYGDSPSVSASGRSSSSASWSMQFDNGHANSAWGLVIVTAGFGGEIRCYQNFGLPRKV 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1057 971 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 536 570 - -
Lele38g1057 971 ProSitePatterns Trp-Asp (WD) repeats signature. 446 460 IPR019775 -
Lele38g1057 971 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 576 IPR001680 GO:0005515
Lele38g1057 971 SMART WD40_4 612 650 IPR001680 GO:0005515
Lele38g1057 971 SMART WD40_4 529 567 IPR001680 GO:0005515
Lele38g1057 971 SMART WD40_4 702 743 IPR001680 GO:0005515
Lele38g1057 971 SMART WD40_4 661 701 IPR001680 GO:0005515
Lele38g1057 971 SMART WD40_4 420 459 IPR001680 GO:0005515
Lele38g1057 971 SMART WD40_4 570 609 IPR001680 GO:0005515
Lele38g1057 971 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 576 610 - -
Lele38g1057 971 MobiDBLite consensus disorder prediction 375 401 - -
Lele38g1057 971 MobiDBLite consensus disorder prediction 898 933 - -
Lele38g1057 971 PANTHER WD REPEAT DOMAIN 44 20 968 IPR040324 -
Lele38g1057 971 SUPERFAMILY WD40 repeat-like 423 755 IPR036322 GO:0005515
Lele38g1057 971 MobiDBLite consensus disorder prediction 15 76 - -
Lele38g1057 971 PRINTS G protein beta WD-40 repeat signature 446 460 IPR020472 -
Lele38g1057 971 PRINTS G protein beta WD-40 repeat signature 596 610 IPR020472 -
Lele38g1057 971 PRINTS G protein beta WD-40 repeat signature 554 568 IPR020472 -
Lele38g1057 971 MobiDBLite consensus disorder prediction 865 881 - -
Lele38g1057 971 MobiDBLite consensus disorder prediction 131 185 - -
Lele38g1057 971 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 468 IPR001680 GO:0005515
Lele38g1057 971 ProSiteProfiles Trp-Asp (WD) repeats profile. 722 743 IPR001680 GO:0005515
Lele38g1057 971 Pfam WD domain, G-beta repeat 722 743 IPR001680 GO:0005515
Lele38g1057 971 Pfam WD domain, G-beta repeat 534 567 IPR001680 GO:0005515
Lele38g1057 971 Pfam WD domain, G-beta repeat 425 458 IPR001680 GO:0005515
Lele38g1057 971 Pfam WD domain, G-beta repeat 572 609 IPR001680 GO:0005515
Lele38g1057 971 MobiDBLite consensus disorder prediction 232 250 - -
Lele38g1057 971 MobiDBLite consensus disorder prediction 781 847 - -
Lele38g1057 971 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 610 IPR001680 GO:0005515
Lele38g1057 971 MobiDBLite consensus disorder prediction 865 933 - -
Lele38g1057 971 MobiDBLite consensus disorder prediction 469 506 - -
Lele38g1057 971 Gene3D - 411 769 IPR015943 GO:0005515
Lele38g1057 971 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 427 461 - -
Lele38g1057 971 MobiDBLite consensus disorder prediction 386 401 - -
Lele38g1057 971 ProSitePatterns Trp-Asp (WD) repeats signature. 554 568 IPR019775 -
Lele38g1057 971 MobiDBLite consensus disorder prediction 830 844 - -
Lele38g1057 971 MobiDBLite consensus disorder prediction 133 166 - -
Lele38g1057 971 MobiDBLite consensus disorder prediction 216 258 - -
Lele38g1057 971 MobiDBLite consensus disorder prediction 796 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1057 Lele-ChrLele38 21925834 21929229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1057 535 743 Miscellaneous Gene Families AT5G08390 24.201 2.17e-12 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g1057 38 21925834 21929229 Lele39g0244 39 1632751 1636586 hybridization