Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10550 ATGGAACACCGGAGAACGCTCACCATGAACTGGGACGGCCTCGGCGATGACGATGACGATGACTGCTTCTTTGAGTACTGCAGTCGCCTCTCCACTGCTGTGCCCCTCGACCTTCTTTCTTCCTCCGATGAGGATGATGACGATGGTGATTTTGATGACCCTCGCTTGTCCTTCGTCTCTGCGATCTCCTCTGTTCACCCTAAAAAAAACAGAGCATCGCCGCAGAACGGAACCACATCCACCGCCGCCCCTGATTACAACATATGGATGGCGACCCCTGCATCAATCACTGAAAGACGAAAGCGGTTGCTTCATGGCATGGGCCTAGATGACAACAAAGAGTTCTTGAAGGCCACAAGCACCAAGCTGGCTCGCGCAATTACGAAGAAATTCCAAAAAGAACAGAATCCCCTTCCTTCTAATTCGTCTGAGCCAGTAACGATTACCACAACAGCAAAAACACCCGTTTTGGCTGCCAATGTTACCGTTACTGCTTCCCCTGTTTCATCAGAACAGAGTAAAACAGAGAAATCCTCTGTTTCATCGGTTATGGTTCGGTCTCGTACTGAAGGTGACATTGATTTGTTTTCCATGGAAAAAGCCAGGAAAGAGGATTTGATTGGAAAGGTATCGAAGCAGCACCTTACAAGGACCTCCACGGAGGTGGCGGTATCCACGGCTAGGGTAATTGCGAACGCCGGAAACAGAGTGGTTCCCAAGGATTCCGGTGAGGCAGGGCAGGCTAATCGGCGTGTCGGGAAATCAATGGATTCTGGAGTGGGGGCGTTCTTCTTGATCAGGAATTTGGATTCTGGAAAGGAATTTATTGTGAATGAGTATGGCGAAGATGGGATGTGGAACAAGTTGAGTGATTTGCAGACAGGGAAGAAGTTAACAATGGAGGAATTTGAGAAAACAGTAGGGCACTCCCGCGTTGTTAATGAGCTCATGAGGCGCCCTAATTCCAGTAGGAACGAGAGGAAACTGTCTTCAAGTTCTTACATTTCGAGAAGTTTGAGGATGAGCAAGAAGAGGGGTGCAGCATTGTTGAGGAACATCAAGGGTGTGGCAAGTGGGTTCATTGGTGAGAGAGAAAGGGAAGCTGCGGTGCAACAACACCAGCAGAACCAGCGTGTTGTGGAGGCTAAGAGTAAGTGGGTGAGAGTTCGGCAGAGTGGTAAGTCACACAAAGAGCTTTCTGCATTGCATTTGTGTCAAGAGTTTCAGGCTCATGATGGATGCATTTGGAACATTAAGTTTAGTTTGGATGGTCATTTTCTTGCAAGTGGTGGAGAAGATAAGGTGGTTCATGTGTGGGAGGTGCAAGAGTGTGATGTTATGTCTTTAAGGCCAGAAGAGGGAAATCAAACTCTTCACTCGTCCTTGCATGTGTCTTCTGACAGACATGTGCAAGAGCCTCATTTGTTGTCTATTGAGATGAAGAAGAAGGGGAAATTTGGAAGCAGAAGAGGGAACATTATTCCAGAATATGTTCATGTGCCTGAAACTGTGTTCTCCCTTTCTGAGAAACCATATTGTTCTTTCCATGGTCATTTGGCTGATGTTTTAGATTTGTCATGGTCTAAATCTCAGCTACTTCTCTCATCATCAATGGATAAAACAGTAAGATTATGGAACTTGGAAACTAAGACTTGCTTGCAGACATTTGCCCATAATGACTATGTAACTTGCATACAATTTAATCCTGTGGATGATGATTATTTCATAAGTGGCTCCCTTGATGCTAAGGTCAGAATATGGAACATCCCTGAACGTCATGTAGTGGATTGGATTGATATCCATGAAATGGTTACTGCAGTTTCTTATACACCTGATGGTCAAGGTGCTCTTGTTGGTACACAAAAAGGGAGTTGTCGTACCTATAGTACAGAAGATTGTATATTAAGTCAAACAGGCACAATTGAGATTCGACACAAGAAGAAATCTCAACTGAGAAAAGTCACGGGCTTCCAGTTTGCTCCTGGAAAACCATCAGAAGTGCTTGTAACTTCAGCTGATTCCAGGATAAGAATTTTGGAAGGTTCAGAAGTTGTTCATAAGTTTAGAGGTTTTCGGAATGCAAATAGCCAAATTGCAGCTTCATTTAGTCAAGATGGGAGATATATTATAAGTGCAAGTGAAGATTCTCAAGTATATGTCTGGAAGCATGAAGAGCAACATAGAAATGCAGCCTCTGGAAAAGGTAGAAATGTGCTAGTTACTAGATCTCATGAGCACTTCCAATGTAAAGATGTTTCAATAGCAATCCCATGGCCTTATACCATAAGGGGTGATCCCCCACCAGTTCCAGTGCATCTTTCCAAAAGGCATTTAAAACATTCTCAAACATCTTATAGTTTTGGAGATGACACCACAACTGGTACAAACAGCAAGAGAATACTTCCACCTGTTCCCAAAAAGAGTAATAACCATACCATAGAAAGTGCCTCAAATTCCCCAAGGGAAGACCCTAGGGCAATTTCACACAGAGAATCTAGACTTAGTGATTCATTTACAAACAGTATGAGAATGGATCCACCTCCTCCTAAGAAAACTAACTTTCATTCCACAGGAAGGGCCTCAATTCCAATAGAGGAAGAAGACCTTGAAACAATTTCACACACATATTCAGGAATTGGTGATTCATTTAGTTCAGGCTCTTCCTCAGCTACGTATTGTGATTCTCCTTCTATATCTGCTGATACCACTTCATCATGTGCATCATGGTCTTCTTCTTATTCATTATCTGAAAGTAGCCATGGTTCCTCAACAATTATTCCTTCAGCATGGGGTTTGGTAATTGTGACTGCTGGATATGGAGGTGAAATCAGATGTTATCAAAATTTTGGTTTACCTCGAAGGATGAGGCCAGCTCACCTTTTTGGAGGCCCTATGTAA 2898 0.4365 MEHRRTLTMNWDGLGDDDDDDCFFEYCSRLSTAVPLDLLSSSDEDDDDGDFDDPRLSFVSAISSVHPKKNRASPQNGTTSTAAPDYNIWMATPASITERRKRLLHGMGLDDNKEFLKATSTKLARAITKKFQKEQNPLPSNSSEPVTITTTAKTPVLAANVTVTASPVSSEQSKTEKSSVSSVMVRSRTEGDIDLFSMEKARKEDLIGKVSKQHLTRTSTEVAVSTARVIANAGNRVVPKDSGEAGQANRRVGKSMDSGVGAFFLIRNLDSGKEFIVNEYGEDGMWNKLSDLQTGKKLTMEEFEKTVGHSRVVNELMRRPNSSRNERKLSSSSYISRSLRMSKKRGAALLRNIKGVASGFIGEREREAAVQQHQQNQRVVEAKSKWVRVRQSGKSHKELSALHLCQEFQAHDGCIWNIKFSLDGHFLASGGEDKVVHVWEVQECDVMSLRPEEGNQTLHSSLHVSSDRHVQEPHLLSIEMKKKGKFGSRRGNIIPEYVHVPETVFSLSEKPYCSFHGHLADVLDLSWSKSQLLLSSSMDKTVRLWNLETKTCLQTFAHNDYVTCIQFNPVDDDYFISGSLDAKVRIWNIPERHVVDWIDIHEMVTAVSYTPDGQGALVGTQKGSCRTYSTEDCILSQTGTIEIRHKKKSQLRKVTGFQFAPGKPSEVLVTSADSRIRILEGSEVVHKFRGFRNANSQIAASFSQDGRYIISASEDSQVYVWKHEEQHRNAASGKGRNVLVTRSHEHFQCKDVSIAIPWPYTIRGDPPPVPVHLSKRHLKHSQTSYSFGDDTTTGTNSKRILPPVPKKSNNHTIESASNSPREDPRAISHRESRLSDSFTNSMRMDPPPPKKTNFHSTGRASIPIEEEDLETISHTYSGIGDSFSSGSSSATYCDSPSISADTTSSCASWSSSYSLSESSHGSSTIIPSAWGLVIVTAGYGGEIRCYQNFGLPRRMRPAHLFGGPM. 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10550 965 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 549 - -
Seca4g10550 965 PANTHER WD REPEAT DOMAIN 44 17 952 IPR040324 -
Seca4g10550 965 Gene3D - 475 748 IPR015943 GO:0005515
Seca4g10550 965 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Seca4g10550 965 PRINTS G protein beta WD-40 repeat signature 575 589 IPR020472 -
Seca4g10550 965 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Seca4g10550 965 PRINTS G protein beta WD-40 repeat signature 533 547 IPR020472 -
Seca4g10550 965 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 722 IPR001680 GO:0005515
Seca4g10550 965 ProSiteProfiles Trp-Asp (WD) repeats profile. 555 589 IPR001680 GO:0005515
Seca4g10550 965 MobiDBLite consensus disorder prediction 780 822 - -
Seca4g10550 965 SMART WD40_4 681 722 IPR001680 GO:0005515
Seca4g10550 965 SMART WD40_4 644 680 IPR001680 GO:0005515
Seca4g10550 965 SMART WD40_4 508 546 IPR001680 GO:0005515
Seca4g10550 965 SMART WD40_4 401 440 IPR001680 GO:0005515
Seca4g10550 965 SMART WD40_4 908 947 IPR001680 GO:0005515
Seca4g10550 965 SMART WD40_4 549 588 IPR001680 GO:0005515
Seca4g10550 965 SMART WD40_4 591 629 IPR001680 GO:0005515
Seca4g10550 965 ProSitePatterns Trp-Asp (WD) repeats signature. 533 547 IPR019775 -
Seca4g10550 965 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 555 IPR001680 GO:0005515
Seca4g10550 965 Pfam WD domain, G-beta repeat 551 588 IPR001680 GO:0005515
Seca4g10550 965 Pfam WD domain, G-beta repeat 406 439 IPR001680 GO:0005515
Seca4g10550 965 Pfam WD domain, G-beta repeat 511 546 IPR001680 GO:0005515
Seca4g10550 965 Pfam WD domain, G-beta repeat 685 722 IPR001680 GO:0005515
Seca4g10550 965 Gene3D - 177 449 IPR015943 GO:0005515
Seca4g10550 965 FunFam WD repeat-containing protein 44 496 764 - -
Seca4g10550 965 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 555 589 - -
Seca4g10550 965 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 449 IPR001680 GO:0005515
Seca4g10550 965 MobiDBLite consensus disorder prediction 776 856 - -
Seca4g10550 965 ProSitePatterns Trp-Asp (WD) repeats signature. 427 441 IPR019775 -
Seca4g10550 965 SUPERFAMILY WD40 repeat-like 402 945 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10550 Seca-Chr4 241523370 241528100 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10550 K20241 - gmx:100779364 1204.89