Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere11g0419 | ATGGAGCGCCGGAAATCGTTCGCATTGAACTGGGACGGTCTCGGGGACGACGAAGACGACGATAACTTCTTCGAGACTCGCGAACGCATCTCCTCTGCCGTTCCGATCGATCTGGAAGCTTCTTCCTCCGACGAAGACGGCGAAGACTTCGAAGACAGCCGCATGTCGTTCACTGTCAGCACCACCGTCTCCCCCGAAAACTCCGACAGATTGAAAAATTATCCGGTCGCCTTCCCCGCCATGGGACCAGAGTACGACATGTGGATCGCCTCTCCTGGATCAATCACGGAGCGCAGAAAACGATTGCTCTTAGGAATGGGCCTCGACGAGAACAGAGAGCTCTTGAGAGTCACAAGCATCGCGCTGGATCGTGCTATTTCGAAGAAATTCGAAAATGGCCACACCAATCTTTCTCCTTTACCATCAACAAGTAAAAGTACATCTGATCCTCTTCCTCCTCCTCCTCCTCCGTCTTCTTCTTCTTCCACAGTTAATGCACAATCAGAGGAGCAACAACAAAAGAAATCAAGAAGAGCTTCCGTTATCCCCTTCATTCTCGGTCGATCGCGATCCGAAGGCGACATCGATATGTTCTCGATGCCAAAATACAGAAAAGAGGAATTCATCGGCAAAGTCTCGAAACAACGCCTCACGAGAACCTCGTCAGACATAGCTTTTCCTCGAGGTGGTGCTCGTCCGCACCAAGACGAATCCCGAGTTGCCGCGAAAGATTCCGTCGAGCGGGGCCAGTCGGCACGGCACGGCTCAAAGATGTCATCGGTAAAGTCGAATTGGGGATTGGGGGCTTTCTTCTTGATCAAGAATTTGGACACAGGAAAGGAGTTCATCGTCAACGAGTACAACGAAGACGGGATGTGGAATAGGCTAAGAGACTTACAAACAGGGAAGAAACTAACAATGGAGGAATTCGAACAGACCGTGGGGCATTCCCCTGTGGTGAAAGAGCTCATGAGTCGTGAAAAGATCAGTAGAAGCAGCAGCGACGGTTGTGGGTACGAGAGAAAACTCAGTACGCAGCATTCATACTTCTCGAAGAGTTTGAGGAAGAGCAAAAGAACAGGGGCTGCATTGTTGAAGAACATAAAGGGAGTGGCGTCTGGGTTCATCGGTGAGAGAGAAAGGGAGGAGTCACAGATTGATCAGAAACCCACTAAGAATGAACAGTGGGTGAGAGTGAGACAGAGTGGGAAATCGGTGAAGGAGCTCTCTGCTCTACATCTGTGTCAGGAGATTCAAGCGCACGAAGGGTGTGTGTGGACGATGAGGTTCAGTTTGGATGGGCATTACATGGCGAGTGCTGGGGAGGATAGGGTGATTCATGTGTGGGAAGTGCAGGAGTTCGAGGTGATGTCGATGAGGCCGGAGGATGGGAGTCTGACGCCGATTCATCCGTCGTTGCTGAGATCGTCGGAGAGAAATGGGAAGGAAAATGGGTGCGAGAAGAAGAAGAAGGGGAAACATGGAAGCAAAAGAGAAGGGAGTTATGGGATTCCTGATTATGTTCATGTGCCTGAAACTGTGTTCTCCTTTTCTGAGAGACCTTATTGCTCATTCCACGGTCATTCCGACGACGTTTTGGATTTGTCTTGGTCTAGATCTCAGTTACTCCTCTCTTCTTCCATGGATAAAACAGTGAGGTTATGGGACTTGGAAACCAAGGCATGCTTGAAGGTGTTTACCCACAATGACTATGTAACCTGCATACAATTCAACCCTGTGGACGAAGATTATTTTATAAGTGGCTCACTGGATGCTAAGGTGAGAATATGGAACATCCCAGAACGATATGTCGTGGATTGGATCGAAATCCATGAAATGGTCACTGCAATTTCTTACACTCCTGATGGTCAAGCCGCTTTTGTTGGTACTCATAATGGAAGTTGTCGTATATATAGCACTGAAGATTGTAAATTAAGTCAAATAGGCTCAACTGAGCTTCGGCGAAAGAAGAAATCTCATTTAAGAAAGGTGACCGGTTTTCAGTTTGCCCCAGGAAATCCATCAGAAGTGCTTGTTACTTCAGCTGATTCCAGGATAAGAAGCATAGAAGATTCAAAAGTTGTTCATAAGTTTATAGGTTTTCGAAATGCAAACAGTCAAATTGCAGCTTCATTTAGTCCAGATGGAAGATATATAATAAGTGCCAGTGAAGATTCTTACGTGTATGTCTGGAAGAAGGAAGGCCATGGAAAAAGCAGAAACCTGGTTGTGACTCACTCCCATGAGCAATTCCAGTGTAGAGATGTCTCAGTAGCAATACCATGGCCTCGTACCATCAAGGGTGACCCTCCAGTAGGACCAGCTTTCCATTCAAAAAGACACTCAAAACGCTCTTTTGCCACTCCTTCTTCATGTGGATCCCCAACTGCTTCTGACGCAAAATGTAACAACAAGAGAATGTTACCACCTCTTCCCAAGAAGAAAAACAACCATACCGCAGATACTGCCTCACCTTCTCGAGAAGACGATCCCTCGGCAATCTCACGCACATCATCTGGCTTTGGTTCCATTTCGTTTACTCGTAGTGGTAGTAAGGGGAAGTGGTCTCCATTTTCTAAGAAGAATGGCCACCATGTCTTGGATCATGCAGAGGAAGACCCTGCAGCTATCTCTCGCACGGATTCTGGGCTTGGGGATTCATTTTCTTCTACTGGTTCTGCTTCAATTAGGTATGGCGATCTGTCGCCTTCTATATCTGGTTCTGCCCGATCATCGTCTGCGTCATGGTCAATGCATTTTGATAATGGCAATGCCAATCCAAATGCTCATAGTTCGGCTTGGGGATTGGTGATTGTAACAGCTGGGTTAGGAGGTGAAATCAGGCCTTTGAAGGGCAAGAAGATCTTGACACTTGTAAAGTATAAGCCAGTGAGCAAGCAATAG | 2904 | 0.4728 | MERRKSFALNWDGLGDDEDDDNFFETRERISSAVPIDLEASSSDEDGEDFEDSRMSFTVSTTVSPENSDRLKNYPVAFPAMGPEYDMWIASPGSITERRKRLLLGMGLDENRELLRVTSIALDRAISKKFENGHTNLSPLPSTSKSTSDPLPPPPPPSSSSSTVNAQSEEQQQKKSRRASVIPFILGRSRSEGDIDMFSMPKYRKEEFIGKVSKQRLTRTSSDIAFPRGGARPHQDESRVAAKDSVERGQSARHGSKMSSVKSNWGLGAFFLIKNLDTGKEFIVNEYNEDGMWNRLRDLQTGKKLTMEEFEQTVGHSPVVKELMSREKISRSSSDGCGYERKLSTQHSYFSKSLRKSKRTGAALLKNIKGVASGFIGEREREESQIDQKPTKNEQWVRVRQSGKSVKELSALHLCQEIQAHEGCVWTMRFSLDGHYMASAGEDRVIHVWEVQEFEVMSMRPEDGSLTPIHPSLLRSSERNGKENGCEKKKKGKHGSKREGSYGIPDYVHVPETVFSFSERPYCSFHGHSDDVLDLSWSRSQLLLSSSMDKTVRLWDLETKACLKVFTHNDYVTCIQFNPVDEDYFISGSLDAKVRIWNIPERYVVDWIEIHEMVTAISYTPDGQAAFVGTHNGSCRIYSTEDCKLSQIGSTELRRKKKSHLRKVTGFQFAPGNPSEVLVTSADSRIRSIEDSKVVHKFIGFRNANSQIAASFSPDGRYIISASEDSYVYVWKKEGHGKSRNLVVTHSHEQFQCRDVSVAIPWPRTIKGDPPVGPAFHSKRHSKRSFATPSSCGSPTASDAKCNNKRMLPPLPKKKNNHTADTASPSREDDPSAISRTSSGFGSISFTRSGSKGKWSPFSKKNGHHVLDHAEEDPAAISRTDSGLGDSFSSTGSASIRYGDLSPSISGSARSSSASWSMHFDNGNANPNAHSSAWGLVIVTAGLGGEIRPLKGKKILTLVKYKPVSKQ | 967 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere11g0419 | 967 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 565 | 599 | - | - | |
| Dere11g0419 | 967 | Gene3D | - | 403 | 759 | IPR015943 | GO:0005515 | |
| Dere11g0419 | 967 | Pfam | WD domain, G-beta repeat | 523 | 556 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | Pfam | WD domain, G-beta repeat | 695 | 732 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | Pfam | WD domain, G-beta repeat | 417 | 449 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | Pfam | WD domain, G-beta repeat | 561 | 598 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 785 | 801 | - | - | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Dere11g0419 | 967 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 437 | 451 | IPR019775 | - | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 132 | 183 | - | - | |
| Dere11g0419 | 967 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 543 | 557 | IPR019775 | - | |
| Dere11g0419 | 967 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 525 | 559 | - | - | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 769 | 857 | - | - | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 146 | 160 | - | - | |
| Dere11g0419 | 967 | PRINTS | G protein beta WD-40 repeat signature | 437 | 451 | IPR020472 | - | |
| Dere11g0419 | 967 | PRINTS | G protein beta WD-40 repeat signature | 543 | 557 | IPR020472 | - | |
| Dere11g0419 | 967 | PRINTS | G protein beta WD-40 repeat signature | 585 | 599 | IPR020472 | - | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 230 | 251 | - | - | |
| Dere11g0419 | 967 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 418 | 459 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 711 | 732 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 465 | 500 | - | - | |
| Dere11g0419 | 967 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 565 | 599 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 476 | 490 | - | - | |
| Dere11g0419 | 967 | SMART | WD40_4 | 601 | 639 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | SMART | WD40_4 | 518 | 556 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | SMART | WD40_4 | 691 | 732 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | SMART | WD40_4 | 559 | 598 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | SMART | WD40_4 | 650 | 690 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | SMART | WD40_4 | 411 | 450 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 219 | 259 | - | - | |
| Dere11g0419 | 967 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 525 | 565 | IPR001680 | GO:0005515 | |
| Dere11g0419 | 967 | SUPERFAMILY | WD40 repeat-like | 412 | 736 | IPR036322 | GO:0005515 | |
| Dere11g0419 | 967 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 418 | 452 | - | - | |
| Dere11g0419 | 967 | MobiDBLite | consensus disorder prediction | 826 | 856 | - | - | |
| Dere11g0419 | 967 | PANTHER | WD REPEAT DOMAIN 44 | 17 | 948 | IPR040324 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere11g0419 | Dere-ChrDere11 | 6936838 | 6945252 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere11g0419 | 524 | 732 | Miscellaneous Gene Families | AT5G08390 | 24.424 | 3.72e-13 | 72.0 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere12g0338 | 12 | 5763413 | 5769420 | Dere11g0419 | 11 | 6936838 | 6945252 | CCT |