Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2410 ATGCAGCGCCGGAAATCCTTCGGATTGAACTGGGACGGTCTCAACGACAATGAAGACGACGATGACTTCTTCGAGACACGCGAGCGTATGTCCACTGCCGTTCGGCTCGATCTAGAAGCTTCTTCTTCCGATGAAGAAGACGGTTTCGAAGACAGCCGTATGTCGTTTTCTTCCACTATCTCCCCCAACCGCTCAGAGAAACCCAAATCTTCACCGCCTCCCTCTGCCGCAACGACGACCACCACCACCGTTGGCAGCGAATACGACATGTGGATGGCGTCCCCTGGATCGATCAGGGAGCGAAGAAAACGATTGCTTCTAGGTATGGGACTCGACGAGAACAAACAGCTCTTGAGAGTCACAAGCGCGGCTCTCGATCGCGCGATCTCGAAGAAATTCGAGAACGGCAATGTCATTTTCTCGAatccatcaccatcaccatcaacAACTACATCATCTCCTCAtcattctccttctccttctacttctacttcttcttcctcctccactaAGAACGCAGAATCATCAGATCAACGGATAAAAACGAAGAAGCCTTCCATTATCCCCTTCGTTCTAGGTCGATCGCGATCTGAAGGAGACATCGATGAGTTCTCGATGCCGAAATACAGAAGAGAGGAATTCATCGGAAAGATCTCGAAGCAACGCCTCACGAAAACCGCATCGGACATATCTCTCCTTCGCAGCAGCGGCGGTGGCGGCGGTGCTGCTCGGAAATGTCCAGAAACTACCGCGAGAGAGTCCCAAGAGGCGGGCCCGCCAGCCGGTCACGGCCGGAAGTTGTCGGCGGTGAAGTCGAATACCGGATTAAGAGCATTTTTTCTCATCAAGAATTTGGACACAGGAAAGGAGTTTATCGTCAATGAGTATAACGAAGACGGAATGTGGAATAGGCTGAGAGATTTACAAACAGGGAAGGGACTTACAATGGAGGAATTCGAAAAAACCGTAGGGCATTCTCCCGTAGTGAAAGAGCTAATGAGTCGTGACAAAGTCGTCAGAAGTAGTAGCGACGGTTTAGGGTACGACAGGAAACTCACCGCACAACATTCATATTTCTCAAGGAGTTTGAGGAAAAGCAAAAGAACAGGGGCTGCTCTGTTGAAGAACATAAAGGGAGTGGCGTCAGGATTCAttggggagagagagagggaggaaacACATAAAGCGTCGCCACAATTGACGACTTCTCCTTCGGAGCAAAAGGGGTCAAAGAATGAAGATTGGGTGAAAGTGAGGCAGAGTGGGAAGTCATGTAAAGAGCTCTCTGCTTTGCATTTGTGTCAAGAGTTTCAAGCTCATGAAGGGTGTGTTTGGGTGATGAGGTTCAGTTGGGATGGGCATTACTTGGCGAGTGCAGGGGAGGACAAGGTGGTTCATGTGTGGGAGGTTCAGGAATTTGAAGGAGAAGATGGGAGTCTCACTCCCATTCATCCATCAATGAGAAATGGAAGAGAAGAAGggaatgagaagaagaagaaggggaaacaTGGAAGCAAAAGAGGAGGGAGTACTGAGATTCCTGATTATGTTCGTCTGCCTGAAACTATGTTTTCTCTTTCAGAGAAACCATATTGCTCTTTTGACGGTCATTCAGATGATATTTTGGATTTGGCTTGGTCTAAATCTCAGTTACTCCTCTCTTCTTCAATGGATAAAACAGTGAGATTATGGGACTTGGAGACTAAAGCATGCATGAAGGTCTTCACCCATAATGACTATGTAACCTGCATACACTTCAACCCTATGGACGACGATTATTTTATAAGTGGCTCCCTTGATGCTAAGGTCAGAATATGGAACATCCCACAACGATATGTCGTAGATTGGATCGATGTTCATGAAATGGTCACTGCAATTTCTTACACCCCTGATGGTCAAGCTGCTTTTGTTGGTACACATAAAGGGAGTTGTCGCGCGTATAGCATAGAAGATTGCAAATTATGTCACGTATGTTCAGTTGAGCTTCGACGAAAGAAGAAATCTCATTTAAGAAAGGTGACTGGTTTTCAGTTTGCCCCAGGTAATCCATCAGAAGTACTTGTTACATCTGCTGATTCTAGGACAAGAATTGTAGAAGGCTCAAAAGTTGTTCACAAATTTATAGgttttcgaaacacaaacaGCCAAATTGCAGCTTCATTCAGTCCAGATGGAAGATATGTCATAAGTGCAAGTGAAGATTCTCAAGTGTTTGTGTGGAAGAATGAAGGGCATGGAAAATGCAGAAACCTTGTTGTGACACGATCCCATGAACACTTCCAATGTAAAGATGTGTCAGTAGCAATACCATGGCCTAGAACCATGAAATGTGACCTTCAAATGGGGACACCAGATCAATCCAAAAGGCATTCAAAACGCTTTTCACACAATGCAATTCCAGTTTCTCCAAGTATTGTTGAAAACCATAAGAAGCGAACATTGCCACCTCTTCCCAAGAAAAGAAATGGCCATACTTTCGAAATGCCCTCGCCTTCTTGCGATCCTTCGGCGGTGACATCTCGTGGGCTTGGCTCTGATTCTTTTGGTCATAGTAGTAGTAAAAAAATGTGGGCACCATTTTTCAAGAAGAATGATCATCACCATGCAGGAGAAGAAGATCCTGCAGCTATCTCACGTACCAATTCTGGAATTGGtgattcattttcttcttctcgtTCTGATTCTATTAGGTATGGTGATTCGCCTTCTATGAATTCTTCGTTTTTTGAGAATGCCAACCCAAATGCAGCTTGGGGGTTAGTGATTGTGACGGCTGGGTTTGGAGGTGAAATTAGGTGTTATCAGAATTTTGGGTTACCTCGGAAGTTATGA 2832 0.4304 MQRRKSFGLNWDGLNDNEDDDDFFETRERMSTAVRLDLEASSSDEEDGFEDSRMSFSSTISPNRSEKPKSSPPPSAATTTTTTVGSEYDMWMASPGSIRERRKRLLLGMGLDENKQLLRVTSAALDRAISKKFENGNVIFSNPSPSPSTTTSSPHHSPSPSTSTSSSSSTKNAESSDQRIKTKKPSIIPFVLGRSRSEGDIDEFSMPKYRREEFIGKISKQRLTKTASDISLLRSSGGGGGAARKCPETTARESQEAGPPAGHGRKLSAVKSNTGLRAFFLIKNLDTGKEFIVNEYNEDGMWNRLRDLQTGKGLTMEEFEKTVGHSPVVKELMSRDKVVRSSSDGLGYDRKLTAQHSYFSRSLRKSKRTGAALLKNIKGVASGFIGEREREETHKASPQLTTSPSEQKGSKNEDWVKVRQSGKSCKELSALHLCQEFQAHEGCVWVMRFSWDGHYLASAGEDKVVHVWEVQEFEGEDGSLTPIHPSMRNGREEGNEKKKKGKHGSKRGGSTEIPDYVRLPETMFSLSEKPYCSFDGHSDDILDLAWSKSQLLLSSSMDKTVRLWDLETKACMKVFTHNDYVTCIHFNPMDDDYFISGSLDAKVRIWNIPQRYVVDWIDVHEMVTAISYTPDGQAAFVGTHKGSCRAYSIEDCKLCHVCSVELRRKKKSHLRKVTGFQFAPGNPSEVLVTSADSRTRIVEGSKVVHKFIGFRNTNSQIAASFSPDGRYVISASEDSQVFVWKNEGHGKCRNLVVTRSHEHFQCKDVSVAIPWPRTMKCDLQMGTPDQSKRHSKRFSHNAIPVSPSIVENHKKRTLPPLPKKRNGHTFEMPSPSCDPSAVTSRGLGSDSFGHSSSKKMWAPFFKKNDHHHAGEEDPAAISRTNSGIGDSFSSSRSDSIRYGDSPSMNSSFFENANPNAAWGLVIVTAGFGGEIRCYQNFGLPRKL 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2410 943 ProSitePatterns Trp-Asp (WD) repeats signature. 456 470 IPR019775 -
Sto1g2410 943 PRINTS G protein beta WD-40 repeat signature 456 470 IPR020472 -
Sto1g2410 943 PRINTS G protein beta WD-40 repeat signature 552 566 IPR020472 -
Sto1g2410 943 PRINTS G protein beta WD-40 repeat signature 594 608 IPR020472 -
Sto1g2410 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 720 741 IPR001680 GO:0005515
Sto1g2410 943 MobiDBLite consensus disorder prediction 385 415 - -
Sto1g2410 943 MobiDBLite consensus disorder prediction 880 896 - -
Sto1g2410 943 MobiDBLite consensus disorder prediction 24 52 - -
Sto1g2410 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 568 - -
Sto1g2410 943 SMART WD40_4 568 607 IPR001680 GO:0005515
Sto1g2410 943 SMART WD40_4 527 565 IPR001680 GO:0005515
Sto1g2410 943 SMART WD40_4 700 741 IPR001680 GO:0005515
Sto1g2410 943 SMART WD40_4 659 699 IPR001680 GO:0005515
Sto1g2410 943 SMART WD40_4 610 648 IPR001680 GO:0005515
Sto1g2410 943 SMART WD40_4 430 469 IPR001680 GO:0005515
Sto1g2410 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 574 IPR001680 GO:0005515
Sto1g2410 943 MobiDBLite consensus disorder prediction 136 175 - -
Sto1g2410 943 MobiDBLite consensus disorder prediction 811 850 - -
Sto1g2410 943 ProSitePatterns Trp-Asp (WD) repeats signature. 552 566 IPR019775 -
Sto1g2410 943 MobiDBLite consensus disorder prediction 1 95 - -
Sto1g2410 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 608 - -
Sto1g2410 943 MobiDBLite consensus disorder prediction 136 188 - -
Sto1g2410 943 SUPERFAMILY WD40 repeat-like 431 744 IPR036322 GO:0005515
Sto1g2410 943 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 943 - -
Sto1g2410 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 437 471 - -
Sto1g2410 943 PANTHER WD REPEAT DOMAIN 44 6 943 IPR040324 -
Sto1g2410 943 Gene3D - 421 768 IPR015943 GO:0005515
Sto1g2410 943 MobiDBLite consensus disorder prediction 231 267 - -
Sto1g2410 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 608 IPR001680 GO:0005515
Sto1g2410 943 MobiDBLite consensus disorder prediction 477 513 - -
Sto1g2410 943 MobiDBLite consensus disorder prediction 53 88 - -
Sto1g2410 943 Pfam WD domain, G-beta repeat 571 607 IPR001680 GO:0005515
Sto1g2410 943 Pfam WD domain, G-beta repeat 704 741 IPR001680 GO:0005515
Sto1g2410 943 Pfam WD domain, G-beta repeat 530 565 IPR001680 GO:0005515
Sto1g2410 943 Pfam WD domain, G-beta repeat 435 468 IPR001680 GO:0005515
Sto1g2410 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 437 471 IPR001680 GO:0005515
Sto1g2410 943 MobiDBLite consensus disorder prediction 832 850 - -
Sto1g2410 943 MobiDBLite consensus disorder prediction 865 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2410 Sto-Chr1 31818038 31821537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2410 533 741 Miscellaneous Gene Families AT5G08390 26.512 8.40e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2410 K20241 - gmx:100782200 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0648 6 6860232 6864479 Sto1g2410 1 31818038 31821537 CCT
Sto1g2410 1 31818038 31821537 Sto1g2410 1 31818038 31821537 ECH