Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2139 ATGGAACGCCGGAAAACGCTCACGATGAACTGGGATGGCCTCGGCGAAATTGACGACGACAGCGCCTTCTTCGAATCCTACAACCGCCTCTCCTCCGCCATCCCTCTCGACCTCGCTTCTTCCTCTGACGACGATGACGACGACTTCGACGACCCCCGCCTCTCCTTCGTCTCCGCTGTCTCCTCTGTTCACTCGCGAAAAAACAGAGCCCCTTCTCCTCCGACTGACCCTGATGCAGATTACGGCCTATGGATGGCGGCCCCCACGTCAATCACCGAACGGCGAAAGCGATTGCTCCACGGCATGGGCCTAGACGACGACAAAGAGTTCTCAAAAACCACGAGCGTCGAGCTCGGCCACTCAATTTCAGAGAAGATCGACCCTGTTCCCTATTCTAATAACTCTGATAAATCACCACCTTTGTCTACTTCCGTGCCTGTTACCGTCACACCTTCTGATTCCTCTGTTTCGGCTGAGAAAGAAACAGAGCATTCCTCTGTTCACTTTGTTCTGGTTCGTTCTCGCTCCGAGGGAGACATCGATTTGTTCTCCATTGAGAGGTCCAGAAAAGAAGATTTCATTGGGAAACGGTCAAAGCAGCTGCTTACGAGAACCAGCACCGAGGTAGCCTTCCCGCGCGCTCGGATTGGAGCTGGAAACAGAGCGGTTGTGAGGGATTCCAACGACACGGCACACTCAAAGCGGAGTGTTGCAAAATTGGAGGATTCGGGAATGGGAGCttttttcttgataaaaaatttggatACTGGAAAGGAGTTTATAGTGAACGAGTATGGTGAAAACGGAATGTGGAACAGGTTAAGTGATTTGCAGACAGGGAAGCAGTTAACGATGGAAGAGTTTGAGAGGAGTGTTGGGAAATCGCGCGTGGTGAATGAGCTTATGAGGCGTGCTAATGCTGGAAGGAACGAAGGTTTCTCGCGGAAACTGTCTTCGAGTTCCTACATTTCGAGGAGTTTGAGGATGAGCAAGCGGAGAGGTGCTGCGTTGTTGAAGAACATAAAGGGCGTGGCGAGTGGGCTCATCGGCGAGCGAGAAAGGGAAGCGATGCCGGTGCAGGTACTGGTGACGGAGGCGAAGAATCAGTGGGTGAGAGTTCGGCAGAGTGGGAAGTCGCACAAGGAGCTCTCTGCTTTGCATCTCTGTCAGGAGTTTCAGGCTCACGAGGGATGTGTTTGGACGATTAAGTTTAGCTTGGATGGTCGGTATCTGGCGAGTGCGGGTGAGGACAGGGTGATTCACTTGTGGGAAGTGCAGGAGTGTGAGGTTATGTCTTTGAGGTCCGACGAGGGAAGTCTCACTCCTCTTCACCCCTCCTTGCTTGCGTCCAATGAGGCTCCACCGTTGGCTagtgagaagaagaagaaggggaaaTTCGGAAGCAGAAGAGGCACCACCATTCCGGAATACGTCCATGTGCCTGAAACTGTCTTCTCACTTTCTGAGAAACCATATTGCTCTTTTCAAGGACATCTGGATGATGTTTTGGATTTGTCGTGGTCTAAATCTCAGTTACTACTCTCATCTTCAATGGATAAAACGGTCAGATTATGGGATTTGGAAACTAAGACTTGCTTGAACATGTTTGCCCATAATGACTATGTAACCTGCATACAATTCAATCCTATCCACGATGATTATTTCATAAGTGGTTCGCTCGATGCTAAGGTCAGAATATGGAATATCCCCGAACACCATGTCGTGGATTGGACTGATATCCATGAAATGGTTACTGCAGTGTCCTATACACCTGACGGTCAGGGTGCTCTTGTTGGTACCCATAAAGGGGGTTGTCGTACATATAGCACAGAAGATTGCATATTAACTCAAACAGGCACAATAGAGATTCGACACAAGAAGAAATCCCAGCTAAGAAAGGTCACTGGTTTCCAGTTTGCTCCAGGCAAACCATCAGAAGTTCTTGTCACTTCAGCCGATTCCAGGATAAGAATATTGGATGGTTCAGAGGTCGTTCAAAAGTTTAGAGGTTTTCGAAATGAAAACAGCCAAATTGCAGCTTCATTTAGTCCAGATGGGAGATATATTATAAGTGCTAGTGAAGATTCTCAAGTATATGTCTGGAAGCATGAAGAGCATAGAAGTGCAGGCAGTGGAAAAGGTAGAAATGTGCTAGTTACCCGTTCTCACGAGCACTTCCAATGTAAAGATGTTTCAGTTGCAATAACATGGCCTTGTACCATAAGAGGTGATCCCCCGCTAGTGCCAGTGAATCATTCCAAAAGGCATTCAAAACGTTCTCAGGCACCTAATTGTGTAGAAGATACAGCATCTGGTACAAACAGTAAGAAAACGCTTCCACCTCTTCCCAAGAAGAGTAATAACCATGCCACAGAAGGTGCCTTTAATTCCCCACAGGAAGACCCTGCAGCAATTTCGCACACAGAATCTGGACTTTGTGATTCATTTGCTTACAGCAAGAGAAATATGCCACCCTCTCCAATGAAAGCTAACTGCCAGACCCCAGAGGAAGAAGACCTTGAAGCTATTTCACTCACAGATTCAGGAATTGGTGATTCATTTAGTTCGGGCTCATCCTCAGTTAGGTATGGTGATTCACCTTCATCATGTGCATCATGGTCCTCCTCTTATTCATTATTGGACAGTAGCCATGTTTCCTCCACAATTCTTCCTTCAGCATGGGGCTTGGTAATTGTGACAGCCGGGTTTGGAGGTGAGATCAGatgttatcaaaattttgggttgCTTAGAAGGATGGGCCGGCAACCCCATCTTTTTGGAGGCTATAACAGTTTTTCTTATGGCAACACCTAG 2814 0.4691 MERRKTLTMNWDGLGEIDDDSAFFESYNRLSSAIPLDLASSSDDDDDDFDDPRLSFVSAVSSVHSRKNRAPSPPTDPDADYGLWMAAPTSITERRKRLLHGMGLDDDKEFSKTTSVELGHSISEKIDPVPYSNNSDKSPPLSTSVPVTVTPSDSSVSAEKETEHSSVHFVLVRSRSEGDIDLFSIERSRKEDFIGKRSKQLLTRTSTEVAFPRARIGAGNRAVVRDSNDTAHSKRSVAKLEDSGMGAFFLIKNLDTGKEFIVNEYGENGMWNRLSDLQTGKQLTMEEFERSVGKSRVVNELMRRANAGRNEGFSRKLSSSSYISRSLRMSKRRGAALLKNIKGVASGLIGEREREAMPVQVLVTEAKNQWVRVRQSGKSHKELSALHLCQEFQAHEGCVWTIKFSLDGRYLASAGEDRVIHLWEVQECEVMSLRSDEGSLTPLHPSLLASNEAPPLASEKKKKGKFGSRRGTTIPEYVHVPETVFSLSEKPYCSFQGHLDDVLDLSWSKSQLLLSSSMDKTVRLWDLETKTCLNMFAHNDYVTCIQFNPIHDDYFISGSLDAKVRIWNIPEHHVVDWTDIHEMVTAVSYTPDGQGALVGTHKGGCRTYSTEDCILTQTGTIEIRHKKKSQLRKVTGFQFAPGKPSEVLVTSADSRIRILDGSEVVQKFRGFRNENSQIAASFSPDGRYIISASEDSQVYVWKHEEHRSAGSGKGRNVLVTRSHEHFQCKDVSVAITWPCTIRGDPPLVPVNHSKRHSKRSQAPNCVEDTASGTNSKKTLPPLPKKSNNHATEGAFNSPQEDPAAISHTESGLCDSFAYSKRNMPPSPMKANCQTPEEEDLEAISLTDSGIGDSFSSGSSSVRYGDSPSSCASWSSSYSLLDSSHVSSTILPSAWGLVIVTAGFGGEIRCYQNFGLLRRMGRQPHLFGGYNSFSYGNT 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2139 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 681 711 IPR001680 GO:0005515
Ssu4g2139 937 SUPERFAMILY WD40 repeat-like 386 705 IPR036322 GO:0005515
Ssu4g2139 937 MobiDBLite consensus disorder prediction 748 806 - -
Ssu4g2139 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 535 IPR001680 GO:0005515
Ssu4g2139 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 569 IPR001680 GO:0005515
Ssu4g2139 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 426 - -
Ssu4g2139 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 433 IPR001680 GO:0005515
Ssu4g2139 937 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 921 - -
Ssu4g2139 937 PRINTS G protein beta WD-40 repeat signature 513 527 IPR020472 -
Ssu4g2139 937 PRINTS G protein beta WD-40 repeat signature 555 569 IPR020472 -
Ssu4g2139 937 PRINTS G protein beta WD-40 repeat signature 411 425 IPR020472 -
Ssu4g2139 937 MobiDBLite consensus disorder prediction 447 469 - -
Ssu4g2139 937 Gene3D - 472 740 IPR015943 GO:0005515
Ssu4g2139 937 PANTHER WD REPEAT DOMAIN 44 7 921 IPR040324 -
Ssu4g2139 937 MobiDBLite consensus disorder prediction 60 82 - -
Ssu4g2139 937 MobiDBLite consensus disorder prediction 127 156 - -
Ssu4g2139 937 MobiDBLite consensus disorder prediction 124 161 - -
Ssu4g2139 937 SMART WD40_4 529 568 IPR001680 GO:0005515
Ssu4g2139 937 SMART WD40_4 570 609 IPR001680 GO:0005515
Ssu4g2139 937 SMART WD40_4 624 660 IPR001680 GO:0005515
Ssu4g2139 937 SMART WD40_4 385 424 IPR001680 GO:0005515
Ssu4g2139 937 SMART WD40_4 488 526 IPR001680 GO:0005515
Ssu4g2139 937 SMART WD40_4 661 702 IPR001680 GO:0005515
Ssu4g2139 937 Pfam WD domain, G-beta repeat 668 702 IPR001680 GO:0005515
Ssu4g2139 937 Pfam WD domain, G-beta repeat 532 568 IPR001680 GO:0005515
Ssu4g2139 937 Pfam WD domain, G-beta repeat 491 526 IPR001680 GO:0005515
Ssu4g2139 937 Pfam WD domain, G-beta repeat 390 423 IPR001680 GO:0005515
Ssu4g2139 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 529 - -
Ssu4g2139 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 535 569 - -
Ssu4g2139 937 MobiDBLite consensus disorder prediction 763 795 - -
Ssu4g2139 937 ProSitePatterns Trp-Asp (WD) repeats signature. 411 425 IPR019775 -
Ssu4g2139 937 ProSitePatterns Trp-Asp (WD) repeats signature. 513 527 IPR019775 -
Ssu4g2139 937 Gene3D - 358 454 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2139 Ssu-Chr4 46778397 46782573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2139 494 702 Miscellaneous Gene Families AT5G08390 24.186 2.22e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2139 K20241 - gmx:100779364 1448.72