Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01541 ATGCAGCCCCGGAAATCGGTCACACTGAACTGGGACGGTCTCGGAGATGACGACGACCTCTTCTTCGAGACGCGCGAACGTATGTCCTCCGCCACTCCGATCGACCTGGAAGCTTCTTCCTCTGACGACGACGACGACTTTGAAGAGAGCCGCATGTCGTTCAGCTCCAACATCTCTACCAATAAGCAATCCGAGAGAGTCAAGCCTTTTCCAGCGGCTTTCGATGCATTGAGCTCCGACTACGACATGTGGATGGCGGCTCCGGGATCAATTACAGAGCGAAGAAAACGATTACTTCTCGGAATGGGACTCAATGAGAACAGAGATTTCTTACGAATCACAAGCATGGCTCTGGATCACGCAATTTCAAAAAAATTCGAAATTGACCAAATCGATTGTTCACCTTCAACACCAACAACAAGCACAGCTAAATCTTCTCCTACTAAATCTTCTTCTCCTCCTCATTCATGTTCTTCCCCTGTAAGTTCAAACAAAGAGGAAACCAAACCTAGAAAATCGAGAAAGCCGTCGATAATCCCCTTCGTTCTCGGTCGCTCACGATCTGAAGGTGACATCACTTCCTTCTCAATGCCAAGATGTAGAAAAGAGGAATTCATCGGAAAAATCTCCAAGCAACGCCTCACGAGAACCTCGTCGGACATGACAATCTGCCACGGCGGCGGCGGCAGCGGTCCGCACCAAGATGAATCCCGAGTCGCCACCAGTGCGAAAGGTAAGGAAAGGCGGCCGTCGCAGCGGCAAGGCTCGAAGATGACGTCGGTGAAGTCTAATTGGGGATTGGGGGCTTTCTTCTTGATCAAGAATTTGGACACAGGAAAAGAATTCATCGTGAACGAGTCTAGAGAAGACGGGATGTGGAACAGACTAAGCGATCTGCAAACAGGGAAGAAACTAACAATGGAGGAATTCGAACGCCACGTCGGGTATTCTCCGATAGTGAAAGAGCTAATGAGTCGTGAGCAAGTGACCAGAAGTACAAGCGACAGTCTCGCATACGAGAGAAAACTCACAACACACCATTCATATTTCTCAAAGAGCTTAAGGAAAAGCAAGAGAACAGGGGCTGCTCTGTTGAAGAACATAAAGGGAGTTGCTTCTGGTTTCATCGGAGAAAGAGAAAGAGACGAAACACAGTTGTCAAATTCTGAGCACAAGCCAGCGACGACGATGACGAAGAAAGAACAGTGGGTGAGAGTGAGACAGAGTGGGAAATCCATAAAGGAGCTCTCAGCTCTGCATCTATGTCAGGAATTTCAAGCTCATGAAGGATGTATATGGACGATTAGGTTCAGTAATAACGGTCATTACATGGCGAGTTCAGGAGAAGACAGGGTAATTCATGTTTGGGAAGTTCAAGAATTCGAGGTGACATCTATGAAGACAGAGGAAGGGAGTCTCACTCCGATTCATCCGTCGTTACTCGGATCGCCGGAACGAAATGGGAAGAAAGGGAAACATGGGAGCAAGAGAGGAAGTAGTTCTACGGTTCCTGATTATGTTCATATCCCTGAAACTGTCTTCTCTTTCTCTGAGAAACCTCATTGCTCTTTCCATGGCCATTCCGACGATGTTTTGGACCTGTCTTGGTCAAGATCTCAGTTACTTCTATCTTCATCAATGGATAAAACAGTGCGATTATGGGACATGGAAAGCAGGGCCTGCTTGAAGGTGTTCACCCACAGTGACTATGTAACGTGCGTACAGTTCAATCCAATGGACGAAGACTATTTCGTAAGTGGATGTTTGGATGCTAAAATAAGGATATGGAATATACCTGAACGTTTTGTGGTGGATTGGATTGATACCCATGAGATGGTCACTGCTATTTCTTACACTCCTGACGCTCAAGCAGCTTTTGTTGGTACTCATAAAGGAGGTTGTCGCGTGTATAGATTAGAAGATGGCAAAATAAGTCGAATGGACACAATTGAGCTTCGGAGAAGGAAGAAATCTCATTTAAGAAAGGTGACTGGTTTTCAGTTTTCTCCAACTAATCCATCAGAAGTGCTTGTTACTTCAGCTGATTCCAGGATCAGAATTATAGAAGATTCCAGAGTTGTTCATAAGTTTGTAGGTTTCCGAAATGCAAACAGCCAAATTTCAGGATCATTTAGCCCAGATGGAAGATATGTGATAAGTGCAAGTGAAGACTCACAAGTATATGTGTGGAAAAATGAAGGCCATGCAAAATCCAGAAGCATGATTCTGACTCAATCCCATGAGCAATTTCAATGCAGAGACGTGTCGGTAGCGATTCCATGGACTCGAACCATTAAAGGCGACCCTCCGGTAGGATTGGCCGTCCACCACCACTCCAAGAGACAATCGAAACATTCTTCTTCTTCATGTGGATCTCCACTTCACCATCATGTTCATAACAACAATAATAAGGGAACAATTTTGCCTCCTCTTATTCCCAAAAAGAAAAACAATCATCACCATAATCATAACCTTGGATCTGATACCACCTCTCCTTCCGCGATCTCCCGTACCATGTCTGGGATTAATGGGGCGATTTCGTTTGCTCATGGTGGTAGTAAGAGCAGGTGGTCCCCATTTTCTAGGAATAAGAGTGGTAACAATGGTGATCACCACGTCACGTCGGAAGAGGATGACGCGGCAGCCATATCTCGCAATAATTCTGGGCTTGGGGACTCGTTTTCTTCTTGTGATTCTGTTTCCATTGGGTATGGCGATTCGCCTTCCATTTCTGCTTCTGCTAGGTCATCATCATCTTCTGGATCTTGGTCAATGCAGTATGATAATGGTCATGCCAATCCAAGTTCTCATGCTTCAGCTTGGGGTTTGGTGATTGTGACAGCTGGGTATGGAGGTGAAATCAGGTGTTATCAAAATTTTGGGTTGCCTAGAAAAGTATGA 2901 0.4557 MQPRKSVTLNWDGLGDDDDLFFETRERMSSATPIDLEASSSDDDDDFEESRMSFSSNISTNKQSERVKPFPAAFDALSSDYDMWMAAPGSITERRKRLLLGMGLNENRDFLRITSMALDHAISKKFEIDQIDCSPSTPTTSTAKSSPTKSSSPPHSCSSPVSSNKEETKPRKSRKPSIIPFVLGRSRSEGDITSFSMPRCRKEEFIGKISKQRLTRTSSDMTICHGGGGSGPHQDESRVATSAKGKERRPSQRQGSKMTSVKSNWGLGAFFLIKNLDTGKEFIVNESREDGMWNRLSDLQTGKKLTMEEFERHVGYSPIVKELMSREQVTRSTSDSLAYERKLTTHHSYFSKSLRKSKRTGAALLKNIKGVASGFIGERERDETQLSNSEHKPATTMTKKEQWVRVRQSGKSIKELSALHLCQEFQAHEGCIWTIRFSNNGHYMASSGEDRVIHVWEVQEFEVTSMKTEEGSLTPIHPSLLGSPERNGKKGKHGSKRGSSSTVPDYVHIPETVFSFSEKPHCSFHGHSDDVLDLSWSRSQLLLSSSMDKTVRLWDMESRACLKVFTHSDYVTCVQFNPMDEDYFVSGCLDAKIRIWNIPERFVVDWIDTHEMVTAISYTPDAQAAFVGTHKGGCRVYRLEDGKISRMDTIELRRRKKSHLRKVTGFQFSPTNPSEVLVTSADSRIRIIEDSRVVHKFVGFRNANSQISGSFSPDGRYVISASEDSQVYVWKNEGHAKSRSMILTQSHEQFQCRDVSVAIPWTRTIKGDPPVGLAVHHHSKRQSKHSSSSCGSPLHHHVHNNNNKGTILPPLIPKKKNNHHHNHNLGSDTTSPSAISRTMSGINGAISFAHGGSKSRWSPFSRNKSGNNGDHHVTSEEDDAAAISRNNSGLGDSFSSCDSVSIGYGDSPSISASARSSSSSGSWSMQYDNGHANPSSHASAWGLVIVTAGYGGEIRCYQNFGLPRKV 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01541 966 Pfam WD domain, G-beta repeat 522 555 IPR001680 GO:0005515
Accr6g01541 966 Pfam WD domain, G-beta repeat 710 731 IPR001680 GO:0005515
Accr6g01541 966 Pfam WD domain, G-beta repeat 560 597 IPR001680 GO:0005515
Accr6g01541 966 Pfam WD domain, G-beta repeat 423 456 IPR001680 GO:0005515
Accr6g01541 966 PANTHER WD REPEAT DOMAIN 44 16 963 IPR040324 -
Accr6g01541 966 PRINTS G protein beta WD-40 repeat signature 542 556 IPR020472 -
Accr6g01541 966 PRINTS G protein beta WD-40 repeat signature 584 598 IPR020472 -
Accr6g01541 966 PRINTS G protein beta WD-40 repeat signature 444 458 IPR020472 -
Accr6g01541 966 MobiDBLite consensus disorder prediction 771 837 - -
Accr6g01541 966 MobiDBLite consensus disorder prediction 131 164 - -
Accr6g01541 966 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 425 459 - -
Accr6g01541 966 SUPERFAMILY WD40 repeat-like 421 739 IPR036322 GO:0005515
Accr6g01541 966 Gene3D - 410 759 IPR015943 GO:0005515
Accr6g01541 966 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 524 558 - -
Accr6g01541 966 ProSiteProfiles Trp-Asp (WD) repeats profile. 425 466 IPR001680 GO:0005515
Accr6g01541 966 ProSitePatterns Trp-Asp (WD) repeats signature. 444 458 IPR019775 -
Accr6g01541 966 SMART WD40_4 600 638 IPR001680 GO:0005515
Accr6g01541 966 SMART WD40_4 649 689 IPR001680 GO:0005515
Accr6g01541 966 SMART WD40_4 517 555 IPR001680 GO:0005515
Accr6g01541 966 SMART WD40_4 690 731 IPR001680 GO:0005515
Accr6g01541 966 SMART WD40_4 558 597 IPR001680 GO:0005515
Accr6g01541 966 SMART WD40_4 418 457 IPR001680 GO:0005515
Accr6g01541 966 MobiDBLite consensus disorder prediction 854 868 - -
Accr6g01541 966 ProSiteProfiles Trp-Asp (WD) repeats profile. 524 564 IPR001680 GO:0005515
Accr6g01541 966 ProSiteProfiles Trp-Asp (WD) repeats profile. 710 731 IPR001680 GO:0005515
Accr6g01541 966 MobiDBLite consensus disorder prediction 467 503 - -
Accr6g01541 966 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 598 IPR001680 GO:0005515
Accr6g01541 966 MobiDBLite consensus disorder prediction 31 60 - -
Accr6g01541 966 MobiDBLite consensus disorder prediction 380 399 - -
Accr6g01541 966 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 564 598 - -
Accr6g01541 966 MobiDBLite consensus disorder prediction 218 260 - -
Accr6g01541 966 MobiDBLite consensus disorder prediction 852 878 - -
Accr6g01541 966 MobiDBLite consensus disorder prediction 131 182 - -
Accr6g01541 966 ProSitePatterns Trp-Asp (WD) repeats signature. 542 556 IPR019775 -
Accr6g01541 966 MobiDBLite consensus disorder prediction 785 807 - -
Accr6g01541 966 MobiDBLite consensus disorder prediction 239 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01541 Accr-Chr6 47955090 47959259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01541 523 731 Miscellaneous Gene Families AT5G08390 25.571 1.10e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01541 K20241 - gmx:100782200 902.123