Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01296 ATGGCACGCCGGAAAACGCTGACGATGGACTGGGACAGCCTCAGCGACGTTGACGACGACGACGCCTTCTTCGAGTCTTACAGCCGCCTCTCCACCGCCGTTCCCGTGGACCTCGCTTCTTCCTCTgacgatgacgacgatgacgacgacaaattcgacgacCCCCGCATGTCCTTTGCCTCCGCCGTCTCCTCTGTTCACCCGCGAAAAAACAGAGCCCCTTCCCCCACCGACGCCGACGCCGACGCCGCCCCCGATTACGGCATATGGATGGCCGCCCCGACCTCAATCAACGAACGCCGAAAACGATTGCTCCACGGCATGGGCCTCGACGACGACAAAGAGTTCTCAAAAAACCCCAGCATGAAGCTTAACCAAACAATTTCAATTAAAGAATACACTCTTCCCTCCTCCAACATTAACTCCAATACCCCCGAGAAAAAGCCAACAATTTTGGTTACTTCCGCGCCGGTTACCGTCGCACCTCCAAAATCCTCTGTTTCGGCAGAGAAGAAAACAGAGCACTCTGTTCCAACAGGGTCAAAAACAGAGCACTCTGTTTCAACAGGGGAGAAAAACACAGAGCAATCCTCTGTTCACATAGTCCCAGTCCGTTCCCGCTCCGAGGGCGACATCGAGTTGTTCTCCGTGGAGAGGTCGAGAAAGGAGGATTTCATCGGGAAGGTGTCGAAGCAGCGCCTGAGGCGGACCGCCACCGCGGTGGCGATCCCGCGCGCCCGAACCACAGCCCGAAACCGAGCGATCACGCGGGACTCCGAAAAACGGAGCGCGGTCAAAGCGGAGGACTCAGCAGTGGGAGCGTTCTTACTGATAAAGAACCTGGACACGGGAACGGAGTTCATCGTGAACGAGTGCGGCGAGAACGGAGCGTGGAACAGGCTGAGCGACTTGCGAACGGGGAAGCAACTAACGATGGAGGAGTTCGAGAGGACGGTGGGGAAGTCGCGCGTGGTGAGCGAGCTGATGAAGCGCGGCAACACGGACCGCAAGCTCTCCTCGTCGACCTCGTACATTTCGAGGAGTCTGAGGCTGAGCAAGAAGAGGGGCGCGGCGTTTCTGAAGAACATAAGAGGCGTGGCGAGCGGGTTCATCGGGGAGCGCGAGAGGGACGCGGTGCACGTGGTGGCGGTGCCCGAGGCGAGGAGCCAGTGGGTGCGCGTGCGCCAGAGCGGGAAGTCGCACAAGGAGCTCTCGGCGCTGCACCTGTGCCAGGAGCTTCGGGGTCACGAGGGGTGCGTGTGGGCCATTAAGTTTAGCTTCGACGGGCGGTACCTCGCGAGTGCGGGGGAGGATAGGGTGGTTCGCTTGTGGGAGGTGCAGGAGTGTGAGGTTATGTCGTTGCGGCCTGAGGATGGGAGCCTCACTCCTCTTCACCCCTCGCTGCTTGCTTCTAACGAGTTTTCTTCTCCCTTCGCCTCTGACAAGAAGAAGAAGGGCAAATTCGGAAGCAAAAGAGGACCTGCTGTTCCTGAATATGTTCATGTTCCGGAAACTGTTTTCTCGCTTTCCGAGAAACCATGTTGCTCTCTTCGCGGACATACTGACGATGTTTTGGACTTGGCATGGTCTAAATCTCAGTTACTTCTATCATCTTCAATGGATAAAACGGTCAGATTATGGGATTTGGAAACTAAGACTTGCTTGAACACGTTTGCCCATAATGACTATGTAACCTGCATACAATTCAATCCAATCGACGATGATTATTTCATAAGTGGTTCGCTCGATACCAAGGTCAGGATATGGAGCATCTCTGAACGCCAAGTTGTGAATTGGATTGATATCCATGAAATGGTTACCGCAGTGTCCTATACACCTGATGGTCAGGGTGCTCTTGTTGGTACCCATAAAGGGAGTTGTCGTACATATAGTACACAAGATTGTGTACTATCTCAAACAGGCACAATTGAGCTTCGACACAAGAAGAAATCTCAACTAAGAAAGATCACTGGTTTCCAGTTTGCTCCAGGCAAACCATCACAAGTTCTTGTCACTTCAGGCGATTCCAGGATAAAAATTTTGGATGGTTCAGAGGTTGTTCAAAAGTATAAAGGTTTTCGAAATTCAAACAGCCAAATTGCAGCTTCATTTAGTCCAGATGGGAGATACATCATAAGTGCAAGTGAAGATTCTCAAGTATATATCTGGAAGCGTGAAGAGCATCATAAAAGTGGAGGCAGTGGTAAAGGTAGAAACGTGCTAGTTATCCGTTCCCATGAGCACTTCCAATGCAAAGACGTTTCAGTAGCAATAGCATGGCCTTATACCATAAGAGGTGACCCCCCAGTAGTGCCAATGCACCATTCCAAAAGACATTCAAAGCGTTTTCAGGCAGCATCTGGTAGTGGTGGAGAAGACACAGCATCGCCATCTGGTAAGAGAACACTTCCACCCCTTCCCAGCAAGAAGTGTGCCTCTCCAAAGGAAGACACAGATTCATTTGCAAGCAGCAAGAGACATCATGTGCCATTGTCTCCAATGAGAGCTAACTGGCGCACCCAAGATGAAGAAGACCTTGATGCTATTTCACGCACAGATTCAGGAATTGGTGACTCTTTTAGTTCAGGGTCATCCTCAGTTAGGTATGGTGATTCACCTTCATCTGCATCATGGTCCTCTTCTTATTCACTATTGGACACTAGCCATGCTTCCTCATCAATTATTCCTTCAGCATGGGGCTTGGTAATTGTCACAGCCGGGTTTGGAGGTGAAATCAAATGTTATCAAAATTTGGGGTTGCCCAGAAAGATGGGCATGCAACCCCATCTTTTTGGAGGCCATAACAGTTTCTCACATGCCAACACATAG 2829 0.5076 MARRKTLTMDWDSLSDVDDDDAFFESYSRLSTAVPVDLASSSDDDDDDDDKFDDPRMSFASAVSSVHPRKNRAPSPTDADADAAPDYGIWMAAPTSINERRKRLLHGMGLDDDKEFSKNPSMKLNQTISIKEYTLPSSNINSNTPEKKPTILVTSAPVTVAPPKSSVSAEKKTEHSVPTGSKTEHSVSTGEKNTEQSSVHIVPVRSRSEGDIELFSVERSRKEDFIGKVSKQRLRRTATAVAIPRARTTARNRAITRDSEKRSAVKAEDSAVGAFLLIKNLDTGTEFIVNECGENGAWNRLSDLRTGKQLTMEEFERTVGKSRVVSELMKRGNTDRKLSSSTSYISRSLRLSKKRGAAFLKNIRGVASGFIGERERDAVHVVAVPEARSQWVRVRQSGKSHKELSALHLCQELRGHEGCVWAIKFSFDGRYLASAGEDRVVRLWEVQECEVMSLRPEDGSLTPLHPSLLASNEFSSPFASDKKKKGKFGSKRGPAVPEYVHVPETVFSLSEKPCCSLRGHTDDVLDLAWSKSQLLLSSSMDKTVRLWDLETKTCLNTFAHNDYVTCIQFNPIDDDYFISGSLDTKVRIWSISERQVVNWIDIHEMVTAVSYTPDGQGALVGTHKGSCRTYSTQDCVLSQTGTIELRHKKKSQLRKITGFQFAPGKPSQVLVTSGDSRIKILDGSEVVQKYKGFRNSNSQIAASFSPDGRYIISASEDSQVYIWKREEHHKSGGSGKGRNVLVIRSHEHFQCKDVSVAIAWPYTIRGDPPVVPMHHSKRHSKRFQAASGSGGEDTASPSGKRTLPPLPSKKCASPKEDTDSFASSKRHHVPLSPMRANWRTQDEEDLDAISRTDSGIGDSFSSGSSSVRYGDSPSSASWSSSYSLLDTSHASSSIIPSAWGLVIVTAGFGGEIKCYQNLGLPRKMGMQPHLFGGHNSFSHANT 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01296 942 MobiDBLite consensus disorder prediction 35 85 - -
Cca01g01296 942 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 557 592 - -
Cca01g01296 942 Pfam WD domain, G-beta repeat 553 590 IPR001680 GO:0005515
Cca01g01296 942 Pfam WD domain, G-beta repeat 513 548 IPR001680 GO:0005515
Cca01g01296 942 Pfam WD domain, G-beta repeat 411 444 IPR001680 GO:0005515
Cca01g01296 942 Pfam WD domain, G-beta repeat 688 724 IPR001680 GO:0005515
Cca01g01296 942 MobiDBLite consensus disorder prediction 771 870 - -
Cca01g01296 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 517 557 IPR001680 GO:0005515
Cca01g01296 942 Gene3D - 496 755 IPR015943 GO:0005515
Cca01g01296 942 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 926 - -
Cca01g01296 942 SMART WD40_4 551 590 IPR001680 GO:0005515
Cca01g01296 942 SMART WD40_4 877 916 IPR001680 GO:0005515
Cca01g01296 942 SMART WD40_4 593 631 IPR001680 GO:0005515
Cca01g01296 942 SMART WD40_4 683 724 IPR001680 GO:0005515
Cca01g01296 942 SMART WD40_4 406 445 IPR001680 GO:0005515
Cca01g01296 942 SMART WD40_4 510 548 IPR001680 GO:0005515
Cca01g01296 942 SMART WD40_4 646 682 IPR001680 GO:0005515
Cca01g01296 942 ProSitePatterns Trp-Asp (WD) repeats signature. 535 549 IPR019775 -
Cca01g01296 942 MobiDBLite consensus disorder prediction 180 199 - -
Cca01g01296 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 703 724 IPR001680 GO:0005515
Cca01g01296 942 ProSitePatterns Trp-Asp (WD) repeats signature. 432 446 IPR019775 -
Cca01g01296 942 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 447 - -
Cca01g01296 942 MobiDBLite consensus disorder prediction 854 870 - -
Cca01g01296 942 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 517 551 - -
Cca01g01296 942 MobiDBLite consensus disorder prediction 161 199 - -
Cca01g01296 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 599 IPR001680 GO:0005515
Cca01g01296 942 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Cca01g01296 942 PRINTS G protein beta WD-40 repeat signature 535 549 IPR020472 -
Cca01g01296 942 PRINTS G protein beta WD-40 repeat signature 577 591 IPR020472 -
Cca01g01296 942 PANTHER WD REPEAT DOMAIN 44 7 926 IPR040324 -
Cca01g01296 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 454 IPR001680 GO:0005515
Cca01g01296 942 SUPERFAMILY WD40 repeat-like 407 914 IPR036322 GO:0005515
Cca01g01296 942 Gene3D - 392 477 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01296 Cca-Chr1 23619374 23624701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01296 411 604 Miscellaneous Gene Families AT5G08390 22.727 6.95e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01296 K20241 - gmx:100779364 1242.25