Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01409 ATGGCCATGGCGTCGGTGGCTCACCAGTTGAGTGGTGTTCGGTGGTCCCCACTGCAATGGAGGCCAACCCAGAAGCGGAGGAGTGGTGTTCTTCCCATAGTGTGTTCCATAGCAATCTCAAACGCACAGAACAAAGAGAGATTGAAGCTCAAAGAGCTCTTTGAAGATGCCTATGAGAGGTGCCGTACTGCTCCCATGGAAGGTGTTTCCTTCACCCTCGAACAATTCACTGAAGCTCTTGAGAAGTATGACTTCGATTCTGAAATTGGGACCAAGGTTAAGGGCACTGTGTTTGGCACTGATGCTAGTGGAGCTTATGTTGACATTACTGCAAAGTCCACGGCTTACTTGCCACTGCAAGAGGCATGCATGCACAAAATTAAGCATGTAGAAGAAGCAGGCATAACTGCTGGCATCAGAGGGGAATTTGTAATCATTGGTGAAAATGAAGCTGATGATACCTTGTTCTTGAGTTTAAGGTCTATCCAGTTTGACCTTGCGTGGGAACGCTGTCGACAACTTCAGGCAGAAGATGCTGTTGTCAAGGGTAAGATTGTTAATGGAAACAGAGGTGGTGTGGTGGCTGAAGTTGAAGGCCTTAAGGGGTTTGTTCCATTCTCACAGATATCAACGAAATCAACTGGAGAAGAGCTTCTTGAGAAGGAGATTCCTCTAAAGTTTGTAGAGGTGGATGAGGAACAGTCCAGGCTTATCCTCAGTCACCGCAAAGCTGTGGCTGACAGCCAGGGACAGCTAGGAATTGGATCAGTGGTCACTGGCACTGTTCAAAGCCTCAAGCCATATGGTGCCTTCATTGATATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGATCGTATAACTGATATTGAAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGCCGAGTAAGTCTTTCTACGAAGAAGTTGGAACCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCTGAAGCCATGGCTCGTGCTGATATGCTTAGGTTCCAGCCTGAGAGTGGATTAACTCTCAGCAGTGACGGTATCTTAGGACCACTTGCTTCAGATTTGCCTGCAGAGGGAGTGGATCTGAGTGAGGTACCCTCAGCTGAGGATTCATGA 1218 0.4754 MAMASVAHQLSGVRWSPLQWRPTQKRRSGVLPIVCSIAISNAQNKERLKLKELFEDAYERCRTAPMEGVSFTLEQFTEALEKYDFDSEIGTKVKGTVFGTDASGAYVDITAKSTAYLPLQEACMHKIKHVEEAGITAGIRGEFVIIGENEADDTLFLSLRSIQFDLAWERCRQLQAEDAVVKGKIVNGNRGGVVAEVEGLKGFVPFSQISTKSTGEELLEKEIPLKFVEVDEEQSRLILSHRKAVADSQGQLGIGSVVTGTVQSLKPYGAFIDIGGISGLLHVSQISHDRITDIETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLASDLPAEGVDLSEVPSAEDS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01409 405 Gene3D - 252 331 IPR012340 -
Rops11g01409 405 FunFam 30S ribosomal protein S1 74 171 - -
Rops11g01409 405 SUPERFAMILY Nucleic acid-binding proteins 254 333 IPR012340 -
Rops11g01409 405 ProSiteProfiles S1 domain profile. 255 323 IPR003029 GO:0003676
Rops11g01409 405 SMART S1_6 88 160 IPR022967 -
Rops11g01409 405 SMART S1_6 176 242 IPR022967 -
Rops11g01409 405 SMART S1_6 253 323 IPR022967 -
Rops11g01409 405 Gene3D - 72 170 IPR012340 -
Rops11g01409 405 FunFam 30S ribosomal protein S1 251 330 - -
Rops11g01409 405 Pfam S1 RNA binding domain 176 242 IPR003029 GO:0003676
Rops11g01409 405 Pfam S1 RNA binding domain 254 323 IPR003029 GO:0003676
Rops11g01409 405 CDD S1_RPS1_repeat_hs4 255 323 - -
Rops11g01409 405 ProSiteProfiles S1 domain profile. 178 242 IPR003029 GO:0003676
Rops11g01409 405 PANTHER 30S RIBOSOMAL PROTEIN S1 46 392 - -
Rops11g01409 405 SUPERFAMILY Nucleic acid-binding proteins 78 185 IPR012340 -
Rops11g01409 405 SUPERFAMILY Nucleic acid-binding proteins 173 246 IPR012340 -
Rops11g01409 405 FunFam 30S ribosomal protein S1, chloroplastic 172 248 - -
Rops11g01409 405 Gene3D - 171 251 IPR012340 -
Rops11g01409 405 ProSiteProfiles S1 domain profile. 90 160 IPR003029 GO:0003676
Rops11g01409 405 Coils Coil 340 360 - -
Rops11g01409 405 CDD S1_RPS1_repeat_ec2_hs2 178 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01409 Rops-Chr11 20837701 20840940 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01409 K02945 - gmx:100806905 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01409 11 20837701 20840940 Rops11g01409 11 20837701 20840940 ECH
Rops2g05012 2 89972748 89975640 Rops11g01409 11 20837701 20840940 PCT