Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01996 ATGGGGTTGTCTTTCACCAAGCTTTTTAGCCGGCTCTTTGCGAAGAAAGAGATGCGTATTCTCATGGTAGGTCTCGACGCTGCTGGTAAGACAACCATATTGTACAAGCTCAAGCTGGGAGAGATTGTGACAACCATTCCCACAATTGGATTTAATGTGGAGACTGTGGAGTATAAAAATATTAGCTTTACTGTCTGGGATGTGGGTGGCCAAGACAAGATTCGTCCTTTATGGAGACACTACTTCCAAAACACTCAGGGACTTATCTTTGTTGTTGATAGCAATGATCGTGACCGTGTTGTTGAAGCTAGAGATGAGCTCCACCGGATGCTGAATGAGGATGAGTTGAGAGATGCAGTTCTCCTTGTATTTGCCAACAAACAAGATCTTCCAAATGCTATGAATGCTGCAGAAATCACAGACAAGCTTGGTCTTCATTCTCTTCGTCAACGCCACTGGTATATCCAGAGCACATGTGCCACCTCTGGGGAAGGGCTCTATGAAGGTCTGGACTGGCTCTCCAACAATATAGCTAACAAGGTACGCTTAGATTCTTCATCTCTTGCGTTAAATGCTTGA 579 0.4456 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVRLDSSSLALNA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01996 192 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Vimu3g01996 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 180 IPR027417 -
Vimu3g01996 192 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Vimu3g01996 192 FunFam ADP-ribosylation factor 1 1 181 - -
Vimu3g01996 192 Gene3D - 4 187 IPR027417 -
Vimu3g01996 192 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Vimu3g01996 192 PANTHER ADP RIBOSYLATION FACTOR-RELATED 7 176 IPR024156 GO:0005525
Vimu3g01996 192 SMART rab_sub_5 18 184 - -
Vimu3g01996 192 NCBIfam small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Vimu3g01996 192 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Vimu3g01996 192 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Vimu3g01996 192 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Vimu3g01996 192 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Vimu3g01996 192 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Vimu3g01996 192 SMART arf_sub_2 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01996 Vimu-Chr3 34850836 34853025 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01996 K07937 - qsu:112030372 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01996 3 34850836 34853025 Vimu3g01996 3 34850836 34853025 ECH
Vimu6g02028 6 18141022 18143215 Vimu3g01996 3 34850836 34853025 ECH