Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02968 ATGACGATGGCGATGGCGATGACGGCGTCGCAGTTACGGTGGGGGTGGGGGTGGAGGCCGGCGCCGAAGCAGCAACGCCGCCGTATGACTCCGGTGGTGTGTTCTATCGCTATAGAGAACGCACAGAATAAAGAGAGAGCGAGGCTGAAAAAGCTCTTCGAAGAAGCGTACGAGAGGTGCCGCACAGCTCCCACCGAAGGCGTTTCCTTCAGTCTCCAACAATTCACCGACGCTCTCGACAAGTACGACTACGAATCGGAAATTGGCACCAAGGCACACTGGCTTTTAGTTGTTAAGGGCACTGTTTTTGCCACGGATGCTAGTGGAGCTTATGTTGACATTACTGCAAAGTCCACAGCTTACTTGCCTCTGCAAGAGTCTTGCATACACAGAATTAAACATGTGGAACAAGCTGGTATAGTTCCTGGCATGAGAGAGGAATTTGTGATCATTGGTGAGAATGAAGCGGACGATACCCTGATCTTGAGTTTGAGGTCTATTCAATATGACCTTGCGTGGGAACGTTGTAGACAACTTCAGGCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTTAATGCAAACAAAGGAGGTGTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAAATATCAACGAAATCAGTAGGAGAAGAACTTCTTGACAAGGAGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGTCAACGCAAAGCTGTGGCTGAAAGCCAAGGGCAGCTAGGAATTGGTTCAGTAGTCACTGGCTGTGTTCAAAGCATAAAGCCATATGGTGCCTTCATTGACATTGGCGGAATCAGTGGCCTTCTACATGTCAGTCAGATCAGTCATGACCGTATAACCGATATTGCTACTGTTCTTTCACCCGGTGATACACTGAAGGTGATGATCTTAAGTCATGACCGGGAGAGGGGACGAGTAAGTCTTTCCACAAAGAAGTTGGAACCCACACCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGAGTGGATTGACTCTCAGCGGTGATGGAATCTTAGGACCACTTGCTTCAGACTTGCCTCCAGAGGGACTGGATCTGAGTGAGGTACCCCCAGCTGAAGATTCATGATTGAGAATTGAGAGCCCCCCTAATTTTTTCTTTCATTTTTTCCTTTTTACACCTTGATCTAAATTTTGTTGTAGAAAGATGAATGTAACGGTTCTTTTCAGCAACTCATTATTGTAGTAAAGGTCATTGTAAAACTCTCATTTTCTGTCCAAGTTATTAGGATAGGTTTGTCCTTGTTATCTTAAGTTAAATTGGCAATAGAAGATCCTGTTGAAAGACTAGATTTACGCATTTGTTTCTGAGAACTATGATTGTCATACTGCTAGCAACCCAACCTGA 1425 0.4547 MTMAMAMTASQLRWGWGWRPAPKQQRRRMTPVVCSIAIENAQNKERARLKKLFEEAYERCRTAPTEGVSFSLQQFTDALDKYDYESEIGTKAHWLLVVKGTVFATDASGAYVDITAKSTAYLPLQESCIHRIKHVEQAGIVPGMREEFVIIGENEADDTLILSLRSIQYDLAWERCRQLQAEDAVVKGKVVNANKGGVVAQVEGLKGFVPFSQISTKSVGEELLDKEIPFKFVEVDEEQSRLVLSQRKAVAESQGQLGIGSVVTGCVQSIKPYGAFIDIGGISGLLHVSQISHDRITDIATVLSPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKSGLTLSGDGILGPLASDLPPEGLDLSEVPPAEDS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02968 381 FunFam 30S ribosomal protein S1 256 335 - -
Pste2g02968 381 SUPERFAMILY Nucleic acid-binding proteins 178 251 IPR012340 -
Pste2g02968 381 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Pste2g02968 381 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Pste2g02968 381 Pfam S1 RNA binding domain 181 245 IPR003029 GO:0003676
Pste2g02968 381 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Pste2g02968 381 SUPERFAMILY Nucleic acid-binding proteins 97 191 IPR012340 -
Pste2g02968 381 SMART S1_6 93 165 IPR022967 -
Pste2g02968 381 SMART S1_6 181 247 IPR022967 -
Pste2g02968 381 SMART S1_6 258 328 IPR022967 -
Pste2g02968 381 SUPERFAMILY Nucleic acid-binding proteins 254 334 IPR012340 -
Pste2g02968 381 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Pste2g02968 381 FunFam 30S ribosomal protein S1 73 176 - -
Pste2g02968 381 Gene3D - 253 332 IPR012340 -
Pste2g02968 381 PANTHER 30S RIBOSOMAL PROTEIN S1 45 347 - -
Pste2g02968 381 CDD S1_RPS1_repeat_hs4 260 328 - -
Pste2g02968 381 CDD S1_RPS1_repeat_ec2_hs2 183 247 - -
Pste2g02968 381 MobiDBLite consensus disorder prediction 359 381 - -
Pste2g02968 381 Gene3D - 96 175 IPR012340 -
Pste2g02968 381 Gene3D - 176 252 IPR012340 -
Pste2g02968 381 FunFam 30S ribosomal protein S1, chloroplastic 177 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02968 Pste-Chr2 29607280 29611865 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02968 2 29607280 29611865 Pste2g02968 2 29607280 29611865 ECH
Pste6g03938 6 28564789 28571762 Pste2g02968 2 29607280 29611865 PCT