Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1267 ATGCCGATGGCGATGACGGCGTCGCAGTTGCAGTGGGGATGGAGGCCGCCGCCGAAGCAGCAACGGCGTCGTATGATTCCGGTGGTGTGTTCCGTGGCCACAGAGAACGCGCAGAAAAAAGAAAGAGTGAGACTGAAACAGCTTTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCTACCGAAGGCGTCTCCTTCACTCTCCAGCAATTCAGCGACTCTCTCGACAAATACGACTACGAATCCGAAGTTGGAGCAAAGGTTAAGGGCACTGTTTTTGCCACAGATGCGAGTGGAGCTTATGTTGACATTACTGCAAAGTCCACAGCCTACTTACCCCTGCAAGAGGCTTGCATCCACAAAATTAAGAAAGTGGAAGAAGCAGGTATAGTTCCTGGCTTGAGGGAGGAATTTATGATCATTGGTGAGAATGGAACGGATGATTCATTGATCCTGAGTTTGAGGTCTATCCAATATGACCTTGCATGGGAACGCTGTAGACAACTTCAGTCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTCAATGCAAATAGAGGTGGTCTGGTGGCTCAAGTGGAAGGCCTCAAGGGGTTTGTTCCATTTTCACAGATATCATCGAAATCAACTGGAGAAGATCTTCTTGAGCAGGAGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTCCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGTTAGGAATTGGATCAGTAGTCGTTGGATCTGTTCAAAGCATAAAGCCATACGGTGCCTTCGTTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGCAACTGTTCTTCAACCTGGTGACATTCTGAAGGTGATGATCTTAAGTCATGATCGGGAGCGAGGACGAGTAAGTCTTTCCACAAAGAAGTTGGAACCCTCACCTGGTGACATGATTCGCAACCCAAAGCTTGTTTTTGAGAAGGCGGAGGAGATGGCTCAGACCTTCAGACAGAGAATCGCGCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAAGTCTCAGCGGTGATGGAATCTTAGGACCACTTTCTTCAGACTTGCCTCCAGAGGGAGTGGATCTGAGTGAGGTACCCCTGGCTGAGGATTCATGA 1203 0.4879 MPMAMTASQLQWGWRPPPKQQRRRMIPVVCSVATENAQKKERVRLKQLFEEAYERCRTAPTEGVSFTLQQFSDSLDKYDYESEVGAKVKGTVFATDASGAYVDITAKSTAYLPLQEACIHKIKKVEEAGIVPGLREEFMIIGENGTDDSLILSLRSIQYDLAWERCRQLQSEDAVVKGKVVNANRGGLVAQVEGLKGFVPFSQISSKSTGEDLLEQEIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVVGSVQSIKPYGAFVDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPSPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLSLSGDGILGPLSSDLPPEGVDLSEVPLAEDS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1267 400 SUPERFAMILY Nucleic acid-binding proteins 168 241 IPR012340 -
Pvu6g1267 400 MobiDBLite consensus disorder prediction 374 400 - -
Pvu6g1267 400 CDD S1_RPS1_repeat_hs4 250 318 - -
Pvu6g1267 400 ProSiteProfiles S1 domain profile. 173 237 IPR003029 GO:0003676
Pvu6g1267 400 Coils Coil 335 355 - -
Pvu6g1267 400 SMART S1_6 248 318 IPR022967 -
Pvu6g1267 400 SMART S1_6 83 155 IPR022967 -
Pvu6g1267 400 SMART S1_6 171 237 IPR022967 -
Pvu6g1267 400 CDD S1_RPS1_repeat_ec2_hs2 173 237 - -
Pvu6g1267 400 ProSiteProfiles S1 domain profile. 85 155 IPR003029 GO:0003676
Pvu6g1267 400 SUPERFAMILY Nucleic acid-binding proteins 71 181 IPR012340 -
Pvu6g1267 400 Gene3D - 244 323 IPR012340 -
Pvu6g1267 400 Gene3D - 166 243 IPR012340 -
Pvu6g1267 400 PANTHER 30S RIBOSOMAL PROTEIN S1 22 400 - -
Pvu6g1267 400 SUPERFAMILY Nucleic acid-binding proteins 249 328 IPR012340 -
Pvu6g1267 400 Pfam S1 RNA binding domain 249 318 IPR003029 GO:0003676
Pvu6g1267 400 Pfam S1 RNA binding domain 172 237 IPR003029 GO:0003676
Pvu6g1267 400 Gene3D - 68 165 IPR012340 -
Pvu6g1267 400 ProSiteProfiles S1 domain profile. 250 318 IPR003029 GO:0003676
Pvu6g1267 400 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 22 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1267 Pvu-Chr6 23683623 23687986 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1267 K02945 - gmx:100806905 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1267 6 23683623 23687986 Pvu6g1267 6 23683623 23687986 ECH
Pvu3g1229 3 29592663 29596218 Pvu6g1267 6 23683623 23687986 PCT