Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01786 ATGGGGTTGTCTTTCACCAAGCTTTTTAGCCGGCTCTTTGCCAAAAAAGAGATGCGTATTCTCATGGTAGGTCTCGACGCTGCTGGTAAGACTACCATATTGTACAAGCTCAAGCTGGGAGAGATTGTGACAACCATTCCCACTATTGGATTTAATGTGGAGACTGTGGAATATAAAAACATTAGCTTTACTGTATGGGATGTGGGTGGCCAAGACAAGATTCGTCCTTTATGGAGACACTACTTCCAAAACACACAGGGACTTATCTTTGTTGTGGATAGCAATGATCGTGACCGTGTTGTTGAGGCTAGAGATGAGCTCCACCGGATGCTGAATGAGGATGAGTTGAGAGATGCAGTTCTCCTTGTATTTGCCAACAAACAAGATCTTCCAAATGCTATGAATGCCGCAGAAATCACAGACAAGCTTGGTCTTCATTCTCTTCGCCAACGCCACTGGTATATCCAGAGCACATGTGCCACCTCTGGGGAAGGACTCTATGAAGGACTGGACTGGCTTTCCAACAATATAGCTAACAAGGTAGAGCATAAATTCTTCATCTCTTGCTTTCGATGCTTGATCTGTATACTGTGGTTGATTTCTGTTTACTTTTGTGGATCAGGCTTAGGGACATTTTTGGGAACGCTGCTATCTTGCTCGGCTTTACGATTATATTATGAAGTTGATCGGTTGATGTTCTCCTAA 705 0.4355 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVEHKFFISCFRCLICILWLISVYFCGSGLGTFLGTLLSCSALRLYYEVDRLMFS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01786 234 SMART rab_sub_5 18 200 - -
Spst10g01786 234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 180 IPR027417 -
Spst10g01786 234 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Spst10g01786 234 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Spst10g01786 234 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Spst10g01786 234 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Spst10g01786 234 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Spst10g01786 234 PANTHER ADP RIBOSYLATION FACTOR-RELATED 7 176 IPR024156 GO:0005525
Spst10g01786 234 Gene3D - 4 186 IPR027417 -
Spst10g01786 234 NCBIfam small GTP-binding protein domain 16 156 IPR005225 GO:0005525
Spst10g01786 234 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Spst10g01786 234 FunFam ADP-ribosylation factor 1 1 181 - -
Spst10g01786 234 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Spst10g01786 234 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Spst10g01786 234 SMART arf_sub_2 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01786 Spst-Chr10 18235722 18238091 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01786 K07937 - mof:131154824 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01786 10 18235722 18238091 Spst10g01786 10 18235722 18238091 ECH
Spst1g02452 1 33221061 33222775 Spst10g01786 10 18235722 18238091 ECH