Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01199 ATGGCGTCTCTGGCTCAGCAGCTGAGCGCCCTCAGATGGTCTCCACTGCCGTCCACGTCTTCGTCAAGACCAACCACCACCCACAACCGCCGCACCCGCACGCTCCTTCCGGTGGTGTGTTCGGTGGCCTTATCGAATGCGCAAAACCGAGAGAGAGTGAAGCTCAAAGAGCTCTTCGAGCAAGCCTATGAGAGGTGCCGCACTGCTCCCATGGAAGGTGTTTCCTTCACCGTTGATCAGTTCACTGAAGCTCTTGAAAAGTATGATTTTGATTCCGAGGTTGGCACCAAGATTAAGGGCACAGTATTTGCTGTAGATGCAAGTGGAGCTTATGTTGACGTTACTGCAAAATCGACTGCATATTTGCCGCTGCAAGAGGCATGCATCCACCGAATTAAGCATGTGCAAGCAGCAGGCATAGTTCCTGGCTTGAGAGAGGAGTTTGTAGTCATTGGGGAAAATGAAGTTGATGATGGCCTGATCTTGAGTTTAAAGGCTATTCAGTTCGACCTTGCATGGGAACGCTGTAGGCAACTTCAAGCAGAAGATGCAGTTGTCAAGGGTAAGATTGTCAATGGAAACAAGGGTGGATTGGTGGCTGAGGTGGAAGGCCTTAAGGGATTTGTTCCATTCTCACAGATTTCATCGAAATTATCTGGAGAAGAGCTACTTGAGAAGGAACTCCCTCTAAAGTTCGTGGAGGTGGATGAGGAACAGTCCAGACTTATCCTCAGTCACCGTAAAGCCGCCGCTGACAGCCAGGGACAGCTGGGAATTGGATCAGTAGTAACTGGCACTGTTCAAAGCCTAAAGCCATATGGTGCCTTCGTTGACATTGGTGGAATCAGTGGTCTCCTTCATGTCAGTCAGATCAGTCACGATCGTATAACTGATATTGCAGCTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATACTAAGTCATGATCGGGAGAGAGGCCGAGTAAGCCTTTCCACAAAGAAGTTGGAACCCACACCTGGTGATATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAAGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCCATGGCTCGAGCTGATATGCTTCGGTTCCAGCCAGAGAGTGGATTAACTCTTAGCAATGAAGGGATTTTAGGACCACTTTCTTCAGAGTTGCCTGCAGAGGGAGTGGATTTCAATAAGGTACCCCCAGCTGAAAAAGATTCATGA 1236 0.4871 MASLAQQLSALRWSPLPSTSSSRPTTTHNRRTRTLLPVVCSVALSNAQNRERVKLKELFEQAYERCRTAPMEGVSFTVDQFTEALEKYDFDSEVGTKIKGTVFAVDASGAYVDVTAKSTAYLPLQEACIHRIKHVQAAGIVPGLREEFVVIGENEVDDGLILSLKAIQFDLAWERCRQLQAEDAVVKGKIVNGNKGGLVAEVEGLKGFVPFSQISSKLSGEELLEKELPLKFVEVDEEQSRLILSHRKAAADSQGQLGIGSVVTGTVQSLKPYGAFVDIGGISGLLHVSQISHDRITDIAAVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSNEGILGPLSSELPAEGVDFNKVPPAEKDS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01199 411 FunFam 30S ribosomal protein S1 79 176 - -
Arst4g01199 411 Gene3D - 176 256 IPR012340 -
Arst4g01199 411 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Arst4g01199 411 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Arst4g01199 411 Pfam S1 RNA binding domain 181 247 IPR003029 GO:0003676
Arst4g01199 411 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Arst4g01199 411 SUPERFAMILY Nucleic acid-binding proteins 85 190 IPR012340 -
Arst4g01199 411 Gene3D - 77 175 IPR012340 -
Arst4g01199 411 PANTHER 30S RIBOSOMAL PROTEIN S1 17 397 - -
Arst4g01199 411 PRINTS Ribosomal protein S1 signature 95 113 IPR035104 -
Arst4g01199 411 PRINTS Ribosomal protein S1 signature 186 202 IPR035104 -
Arst4g01199 411 PRINTS Ribosomal protein S1 signature 113 127 IPR035104 -
Arst4g01199 411 PRINTS Ribosomal protein S1 signature 231 251 IPR035104 -
Arst4g01199 411 Gene3D - 257 336 IPR012340 -
Arst4g01199 411 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Arst4g01199 411 Coils Coil 345 365 - -
Arst4g01199 411 CDD S1_RPS1_repeat_hs4 260 328 - -
Arst4g01199 411 SMART S1_6 258 328 IPR022967 -
Arst4g01199 411 SMART S1_6 93 165 IPR022967 -
Arst4g01199 411 SMART S1_6 181 247 IPR022967 -
Arst4g01199 411 MobiDBLite consensus disorder prediction 382 411 - -
Arst4g01199 411 CDD S1_RPS1_repeat_ec2_hs2 183 247 - -
Arst4g01199 411 FunFam 30S ribosomal protein S1, chloroplastic 177 253 - -
Arst4g01199 411 FunFam 30S ribosomal protein S1 256 335 - -
Arst4g01199 411 SUPERFAMILY Nucleic acid-binding proteins 182 250 IPR012340 -
Arst4g01199 411 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01199 Arst-Chr4 11245515 11248661 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01199 K02945 - gmx:100806905 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g01199 4 11245515 11248661 Arst4g01199 4 11245515 11248661 ECH
Arst1g03270 1 93753090 93755287 Arst4g01199 4 11245515 11248661 PCT