Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01860 ATGCCGATGGCGATGACGGCGTCGCAGTTGCGGTGGGGCTGGAGGCCGCCGCCGAAGCAGCAACGGCGTCGTATGGTTCCGGTGGTGTGTTCCGTGGCTACAGAGAACGCGCAGAGAAAAGAGAGAGCGAGACTGAAAAAGCTTTTCGAAGAAGCGTACGAGAGGTGCCGCACTACTCCCACCGAAGGCGTCTCCTTCACTCTCCAGCAATTCACCGACGCTCTCGACAAGTATGACTACGAATCCGAAGTTGGCGCTAAGGTTAAGGGCACTGTTTTTGCCACAGATGCTAGTGGAGCTTATGTTGACATTACTGCAAAGTCTACAGCCTACTTGCCCTTGCAAGAGGCTTGCATCCAGAAAATTAAGAAAGTGGAAGAAGCAGGTATAGCTCCTGGATTGAGGGAGGAATTTATGATCATTGGTGAGAATGGAACCGATGATACATTGATCCTGAGTTTGAGGTCTATCCAATATGACCTTGCATGGGAACGCTGTAGACAACTTCAGTCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTCAGTGCAAACAAAGGTGGTCTAGTGGCTCAAGTGGAAGGCCTCAAGGGGTTTGTTCCATTTTCACAGATATCAGGGAAATCAACTGGAGAAGAGCTTCTTGAGCAGGAGATTCCTTTTAAGTTTGTGGAGGTAGATGAGGAACAGTCTAGACTTGTCCTTAGTCACCGTAAAGCTGTGGCTGAGAGCCAAGGACAGTTAGGAATTGGATCAGTAGTCACTGGAACTGTTCAAAGCATAAAGCCATATGGTGCCTTCGTTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGCAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCACGATCGGGAGAGAGGACGTGTAAGTCTTTCCACCAAGAAGTTGGAACCCTCACCTGGTGACATGATTCGCAACCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAAAGAATCGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCGGAGAGTGGATTAAGTCTCAGCGGTGAGGGAATCTTAGGACCACTTTCTTCAGACTTGCCTCCAGAGGGAGTGAATCTGAGTGAGGCACCCCTAGCTGAAGATTCATGA 1203 0.4879 MPMAMTASQLRWGWRPPPKQQRRRMVPVVCSVATENAQRKERARLKKLFEEAYERCRTTPTEGVSFTLQQFTDALDKYDYESEVGAKVKGTVFATDASGAYVDITAKSTAYLPLQEACIQKIKKVEEAGIAPGLREEFMIIGENGTDDTLILSLRSIQYDLAWERCRQLQSEDAVVKGKVVSANKGGLVAQVEGLKGFVPFSQISGKSTGEELLEQEIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGTVQSIKPYGAFVDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPSPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLSLSGEGILGPLSSDLPPEGVNLSEAPLAEDS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01860 400 PRINTS Ribosomal protein S1 signature 85 103 IPR035104 -
Lapu6g01860 400 PRINTS Ribosomal protein S1 signature 176 192 IPR035104 -
Lapu6g01860 400 PRINTS Ribosomal protein S1 signature 221 241 IPR035104 -
Lapu6g01860 400 PRINTS Ribosomal protein S1 signature 103 117 IPR035104 -
Lapu6g01860 400 ProSiteProfiles S1 domain profile. 85 155 IPR003029 GO:0003676
Lapu6g01860 400 CDD S1_RPS1_repeat_hs4 250 318 - -
Lapu6g01860 400 FunFam 30S ribosomal protein S1, chloroplastic 167 243 - -
Lapu6g01860 400 Pfam S1 RNA binding domain 172 237 IPR003029 GO:0003676
Lapu6g01860 400 Pfam S1 RNA binding domain 249 318 IPR003029 GO:0003676
Lapu6g01860 400 SMART S1_6 171 237 IPR022967 -
Lapu6g01860 400 SMART S1_6 248 318 IPR022967 -
Lapu6g01860 400 SMART S1_6 83 155 IPR022967 -
Lapu6g01860 400 FunFam 30S ribosomal protein S1 246 325 - -
Lapu6g01860 400 CDD S1_RPS1_repeat_ec2_hs2 173 237 - -
Lapu6g01860 400 Coils Coil 335 355 - -
Lapu6g01860 400 SUPERFAMILY Nucleic acid-binding proteins 73 181 IPR012340 -
Lapu6g01860 400 Gene3D - 166 245 IPR012340 -
Lapu6g01860 400 PANTHER 30S RIBOSOMAL PROTEIN S1 37 387 - -
Lapu6g01860 400 MobiDBLite consensus disorder prediction 372 400 - -
Lapu6g01860 400 ProSiteProfiles S1 domain profile. 173 237 IPR003029 GO:0003676
Lapu6g01860 400 Gene3D - 68 165 IPR012340 -
Lapu6g01860 400 SUPERFAMILY Nucleic acid-binding proteins 168 241 IPR012340 -
Lapu6g01860 400 FunFam 30S ribosomal protein S1 69 166 - -
Lapu6g01860 400 ProSiteProfiles S1 domain profile. 250 318 IPR003029 GO:0003676
Lapu6g01860 400 SUPERFAMILY Nucleic acid-binding proteins 249 328 IPR012340 -
Lapu6g01860 400 Gene3D - 246 326 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01860 Lapu-Chr6 18382579 18386971 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01860 K02945 - gmx:100806905 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01860 6 18382579 18386971 Lapu6g01860 6 18382579 18386971 ECH