Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00059 ATGGCGATGACGATGGCGATGACGGTGTCGCAGTTGCGGTGGGGGTGGAGTCCATCGCCGAAGCAGCAACGACGTCGTATGGTTCCGGTGGTGTGTTCCATCGCTATAGAGAACGCGCAGAACAAAGAGAGAGCGAAATTGAAGAAACTGTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTTTCCTTCACTCTCCAACAATTCACCGACGCTCTCGACAAGTACGACTTCAACGCTGAAATGGGCACCAAGGTTAAGGGCACTGTTTTTGCCACAGATAACAGTGGAGCTTATGTTGACATTACTGCAAAGTCCACGGCCTACTTGCCTCTGCAAGAGGCTTGCATCCATAGAATTAAGAATGTGGAAGAAGCAGGCATAATTCCTGGCATGAGAGAGGAATTTATGATCATTGGTGAGAATCAAGCAGATGATACCTTGATCTTGAGTTTGAGGTCTATCCAATTTGACCTTGCATGGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAGGGGTAAGGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGAAATCAGATGGAGAAGAGCTTCTTGAGCAGGAGATTCCTTTTAAGTTTGTAGAGGTGGATGAGGAACAGTCTAGACTTGTTCTCAGTCATCGCAAAGCTGTGGCTGAGAGCCAAGGACAGCTAGGAATTGGATCAGTAGTCACTGGCTCTGTTCAAAGCATAAAACCGTATGGTGCCTTCATTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGAAACTGTTCTTCAACCCGGTGATATTCTGAAGGTGATGATCTTAAGTCATGACCGGGAGAGAGGACGAGTAAGTCTTTCCACAAAGAAGTTGGAACCCACGCCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATCGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGATTCCAGCCAGAGAGTGGATTAACTCTCAGCGGTGACGGAATCTTAGGACCACTTGCCTCAGACTTGCCTCCAGAGGGACTGGATCTGAGTGAGGTACCCCCAGCTGAAGATTCGTCATGA 1212 0.481 MAMTMAMTVSQLRWGWSPSPKQQRRRMVPVVCSIAIENAQNKERAKLKKLFEEAYERCRTAPTEGVSFTLQQFTDALDKYDFNAEMGTKVKGTVFATDNSGAYVDITAKSTAYLPLQEACIHRIKNVEEAGIIPGMREEFMIIGENQADDTLILSLRSIQFDLAWERCRQLKAEDAVVRGKVVNANKGGLVAQVEGLKGFVPFSQISSKSDGEELLEQEIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAFIDIGGISGLLHVSQISHDRITDIETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGDGILGPLASDLPPEGLDLSEVPPAEDSS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00059 403 Gene3D - 70 167 IPR012340 -
Pumo2g00059 403 Gene3D - 168 248 IPR012340 -
Pumo2g00059 403 FunFam 30S ribosomal protein S1 71 168 - -
Pumo2g00059 403 ProSiteProfiles S1 domain profile. 252 320 IPR003029 GO:0003676
Pumo2g00059 403 CDD S1_RPS1_repeat_ec1_hs1 87 157 - -
Pumo2g00059 403 Pfam S1 RNA binding domain 251 320 IPR003029 GO:0003676
Pumo2g00059 403 Pfam S1 RNA binding domain 173 239 IPR003029 GO:0003676
Pumo2g00059 403 ProSiteProfiles S1 domain profile. 87 157 IPR003029 GO:0003676
Pumo2g00059 403 SMART S1_6 85 157 IPR022967 -
Pumo2g00059 403 SMART S1_6 250 320 IPR022967 -
Pumo2g00059 403 SMART S1_6 173 239 IPR022967 -
Pumo2g00059 403 PANTHER 30S RIBOSOMAL PROTEIN S1 43 389 - -
Pumo2g00059 403 CDD S1_RPS1_repeat_hs4 252 320 - -
Pumo2g00059 403 MobiDBLite consensus disorder prediction 374 403 - -
Pumo2g00059 403 CDD S1_RPS1_repeat_ec2_hs2 175 239 - -
Pumo2g00059 403 SUPERFAMILY Nucleic acid-binding proteins 246 326 IPR012340 -
Pumo2g00059 403 SUPERFAMILY Nucleic acid-binding proteins 79 183 IPR012340 -
Pumo2g00059 403 Gene3D - 249 328 IPR012340 -
Pumo2g00059 403 FunFam 30S ribosomal protein S1 248 327 - -
Pumo2g00059 403 SUPERFAMILY Nucleic acid-binding proteins 174 242 IPR012340 -
Pumo2g00059 403 FunFam 30S ribosomal protein S1, chloroplastic 169 245 - -
Pumo2g00059 403 Coils Coil 337 357 - -
Pumo2g00059 403 ProSiteProfiles S1 domain profile. 175 239 IPR003029 GO:0003676
Pumo2g00059 403 PRINTS Ribosomal protein S1 signature 105 119 IPR035104 -
Pumo2g00059 403 PRINTS Ribosomal protein S1 signature 178 194 IPR035104 -
Pumo2g00059 403 PRINTS Ribosomal protein S1 signature 87 105 IPR035104 -
Pumo2g00059 403 PRINTS Ribosomal protein S1 signature 223 243 IPR035104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00059 Pumo-Chr2 1288493 1292929 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00059 K02945 - gmx:100806905 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00059 2 1288493 1292929 Pumo2g00059 2 1288493 1292929 ECH
Pumo4g00506 4 6768282 6772393 Pumo2g00059 2 1288493 1292929 PCT