Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0004 ATGCCGAGTCTGGGTCTAGGAGACACTATCCCAAACCTGGAAGTGGAAACCACACATGGGAAGTTCAAACTCCATGACTTCTTCGGAGATAGCTTGGCCATAATCTTCTCCCACCCAAAATTGGTTCCTGGTAGCAAGGTGTCATACCCGATAGTTTCGGATCCGAAGTCGGATATTATCCTGCTACTCAACATGGTGGATCCTGCAATAGACTCCTACGGAAACAATCTCCCCTCTCGAGTTCTCTACATCATTGGCCCTGACAAGAAGATTAAGCTGGGCTTTCTTTACCCGGGGTCCACTGGCCGCAACGTGGATGAAGTGATGAGGGTGCTGGACGCACTGCAGAAGGCGGCCAAGCACAGGATCGCCACTCCCGTCAACTGGAAACCAGGTGAGCTGGTGGTCATTCAGCCAGGTGTCTCCGACGACGAAGCCAAACAGTTGTTCCCTCAGGGTTTCCAGACTGTTGCTCTTCCATCCAACAATTTTCCTTCTGACAGTTCTGGGCTGCCTGCATTATTGCCTTGCCTATGGATTGACTATCCCTGGATCTTCCAAGTCCTCTTTGCATGA 576 0.5104 MPSLGLGDTIPNLEVETTHGKFKLHDFFGDSLAIIFSHPKLVPGSKVSYPIVSDPKSDIILLLNMVDPAIDSYGNNLPSRVLYIIGPDKKIKLGFLYPGSTGRNVDEVMRVLDALQKAAKHRIATPVNWKPGELVVIQPGVSDDEAKQLFPQGFQTVALPSNNFPSDSSGLPALLPCLWIDYPWIFQVLFA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0004 191 SUPERFAMILY Thioredoxin-like 5 161 IPR036249 -
Vvi5g0004 191 Gene3D Glutaredoxin 3 42 - -
Vvi5g0004 191 Gene3D Antioxidant, Horf6; Chain A, domain2 104 164 - -
Vvi5g0004 191 PANTHER MCG48959-RELATED 5 40 - -
Vvi5g0004 191 Gene3D Glutaredoxin 43 103 - -
Vvi5g0004 191 FunFam Peroxiredoxin protein 104 161 - -
Vvi5g0004 191 Pfam C-terminal domain of 1-Cys peroxiredoxin 114 153 IPR019479 GO:0051920
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0004 Vvi-Chr5 19031 22803 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0004 K11188 - vvi:100244727 313.923