Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01442 ATGCCGATGGCGATGACCGCGTCGCAGTTGCGGTGGGGATGGAGACCGCCGCCGAAGCAGCAACGGCGGCGTATGGCTCCGGTGGTGTGTTCAGTGGCTACAGAGAACGCGCAGAAGAAAGAGAGAGCGAGACTAAAAAAGCTTTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTCTCCTTCACTCTCCAGCAATTCACCGACGCTCTCGACAAATATGACTACGAATCAGAAGTTGGCACTAAGGCACGTTCCTTTTCCTTTACCGTTAAGGGCACTGTTTTTGCCACAGATGCAGGTGGAGCTTATGTTGACATTACTGCAAAGTCCACAGCCTACTTGCCGCTGCAAGAGGCTTGCATTAGCAAAATTAAGAAAGTTGAAGAAGCAGGTATAGTTCCTGGGTTAAGGGAGGAATTTATGATCATTGGTGAGAATGGAACGGATGATACATTGATCCTGAGTTTGAGGTCTATCCAATATGACCTTGCATGGGAGCGCTGTAGACAACTGCAGGCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTCAGTGCAAACAAAGGCGGTTTGGTGGCTCAAGTGGAAGGCCTCAAGGGGTTTGTTCCATTTTCACAGATATCAGCGAAATCAACTGGAGAAGAGCTTCTTGAGCAGGAGATTTCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTCCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGTTAGGAATTGGATCAGTAGTCATTGGCTCTGTTCAAAGCATAAAGCCATATGGTGCCTTCGTTGACATTGGTGGGATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGCCACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGATCGGCAGAGAGGACGTGTAAGTCTTTCCACAAAGAAGTTGGAACCCTCACCTGGTGACATGATTCGCAACCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATCGCACAAGCAGAAGCTATGGCTCGTGCTGATATGCTCAGGTTCCAGCCAGAGGGTGGATTAAGTCTCAGCGGTGAGGGAATCTTAGGACCACTTTCTTCAGACTTGCCTCCAGAGGGAGTGAATCTGAGTGAGGTACCCCTGGCTGAAGAGTCATGA 1224 0.4918 MPMAMTASQLRWGWRPPPKQQRRRMAPVVCSVATENAQKKERARLKKLFEEAYERCRTAPTEGVSFTLQQFTDALDKYDYESEVGTKARSFSFTVKGTVFATDAGGAYVDITAKSTAYLPLQEACISKIKKVEEAGIVPGLREEFMIIGENGTDDTLILSLRSIQYDLAWERCRQLQAEDAVVKGKVVSANKGGLVAQVEGLKGFVPFSQISAKSTGEELLEQEISFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVIGSVQSIKPYGAFVDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRQRGRVSLSTKKLEPSPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPEGGLSLSGEGILGPLSSDLPPEGVNLSEVPLAEES 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01442 407 ProSiteProfiles S1 domain profile. 92 162 IPR003029 GO:0003676
Vimu2g01442 407 ProSiteProfiles S1 domain profile. 257 325 IPR003029 GO:0003676
Vimu2g01442 407 PANTHER 30S RIBOSOMAL PROTEIN S1 36 394 - -
Vimu2g01442 407 FunFam 30S ribosomal protein S1 253 332 - -
Vimu2g01442 407 Gene3D - 173 253 IPR012340 -
Vimu2g01442 407 MobiDBLite consensus disorder prediction 385 407 - -
Vimu2g01442 407 FunFam 30S ribosomal protein S1, chloroplastic 174 250 - -
Vimu2g01442 407 Coils Coil 342 362 - -
Vimu2g01442 407 SUPERFAMILY Nucleic acid-binding proteins 256 335 IPR012340 -
Vimu2g01442 407 CDD S1_RPS1_repeat_ec2_hs2 180 244 - -
Vimu2g01442 407 SMART S1_6 90 162 IPR022967 -
Vimu2g01442 407 SMART S1_6 255 325 IPR022967 -
Vimu2g01442 407 SMART S1_6 178 244 IPR022967 -
Vimu2g01442 407 SUPERFAMILY Nucleic acid-binding proteins 175 248 IPR012340 -
Vimu2g01442 407 Gene3D - 254 333 IPR012340 -
Vimu2g01442 407 SUPERFAMILY Nucleic acid-binding proteins 89 188 IPR012340 -
Vimu2g01442 407 ProSiteProfiles S1 domain profile. 180 244 IPR003029 GO:0003676
Vimu2g01442 407 Pfam S1 RNA binding domain 256 325 IPR003029 GO:0003676
Vimu2g01442 407 Pfam S1 RNA binding domain 178 244 IPR003029 GO:0003676
Vimu2g01442 407 FunFam 30S ribosomal protein S1 69 173 - -
Vimu2g01442 407 Gene3D - 93 172 IPR012340 -
Vimu2g01442 407 CDD S1_RPS1_repeat_hs4 257 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01442 Vimu-Chr2 9792102 9796072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01442 K02945 - gmx:100806905 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01442 2 9792102 9796072 Vimu2g01442 2 9792102 9796072 ECH
Vimu7g01673 7 15524722 15527697 Vimu2g01442 2 9792102 9796072 PCT