Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01514 ATGGCCATGGCGTCTCTGACTCAGCAACTCACTGGTCTCAAGTGGACCCCACTTCTATGCAAACCAACAACACATCCACAGAAGCAAAAGCGCGGTGTTCTTCCTATTGTATGTTCCATTGCAATTTCAAGCACACAGAACAAAGAGAGATCAGTACTTAACGACCTTTTTGAAGATGCTTATGAGAGATGCCGTATTGCTCCATTGCAAGGTGTTCCATTCACTCTCGACCAATTCACTGAAACTCTTGATAAGTTTGATTATGAGTCTGAAATTGGAGCCAAGGTTAAAGGCATTGTGTTTGGCTCTGATGCTAGTGGAGCTTTTGTTGACATTACCTCAAAATCTACAGCATACTTGCCACTATATGAGGCATCTATCCGAAGAATTAGGCATGTAGAAGATATAGGCTTAATTCCTGGTGCGAAAGAGGAGTTTGTAATCATCGATGAAAATGAAACTGATGGTTTGATCTTAAGTTTAAGATCTATCCAATATGACCTTGCATGGGAACGATGTAGGCAACTTCAGGCAGAAGATGTTGTTGTCAAGGGTAAGCTTATTGATTCAAATAAAGGTGGTGTCGTGGCTGAAGTCGAAGGCCTTAAAGGGTTTGTTCCATTCTCACAGATGTCAACGAAAACACCGGGAGAAGAGATTATTGAGATGGAGATTCCTTTAAAGTTTGTGGAGGTTGACGAGGAAGAGTCCAGACTTATCCTTAGCCACCGCAAAGCTGTGGCCGGCATCCAGGCACAACTAGGAATTGGATCAGTAGTCACTGGCACCGTGCAAAGCTTAAAGCCATATGGTGCCTTTATTGATATCGGTGGAATTAGTGGCCTCCTTCATGTCAGCCAAATCAGTCATGATCGTATATCTGATATTGAAACTGTTCTTCAACCTGGTGATGTTCTGAAGGTGATGATATTAAGTCATGATCGTGAGAGAGGCCGTGTAAGTCTTTCCACAAAGAAGTTGGAACCTACACCTGGAGACATGATTCGTAATCCAACACTTGTCTTCGATAAGGCCGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCGCAAGCAGAAGCCATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTCAGCAGTGATGGGATCTTAGGACCACTTGGTTCAGATTTGCCTCTAGAGGGACTGGATCTGAGTGAGATACCACCAGCTGAAGATTAA 1221 0.4382 MAMASLTQQLTGLKWTPLLCKPTTHPQKQKRGVLPIVCSIAISSTQNKERSVLNDLFEDAYERCRIAPLQGVPFTLDQFTETLDKFDYESEIGAKVKGIVFGSDASGAFVDITSKSTAYLPLYEASIRRIRHVEDIGLIPGAKEEFVIIDENETDGLILSLRSIQYDLAWERCRQLQAEDVVVKGKLIDSNKGGVVAEVEGLKGFVPFSQMSTKTPGEEIIEMEIPLKFVEVDEEESRLILSHRKAVAGIQAQLGIGSVVTGTVQSLKPYGAFIDIGGISGLLHVSQISHDRISDIETVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFDKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPLEGLDLSEIPPAED 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01514 406 Gene3D - 251 329 IPR012340 -
Trre3g01514 406 ProSiteProfiles S1 domain profile. 93 162 IPR003029 GO:0003676
Trre3g01514 406 SUPERFAMILY Nucleic acid-binding proteins 175 247 IPR012340 -
Trre3g01514 406 ProSiteProfiles S1 domain profile. 257 325 IPR003029 GO:0003676
Trre3g01514 406 FunFam 30S ribosomal protein S1, chloroplastic 174 250 - -
Trre3g01514 406 Coils Coil 342 362 - -
Trre3g01514 406 SMART S1_6 178 244 IPR022967 -
Trre3g01514 406 SMART S1_6 255 325 IPR022967 -
Trre3g01514 406 SMART S1_6 91 162 IPR022967 -
Trre3g01514 406 Pfam S1 RNA binding domain 91 162 IPR003029 GO:0003676
Trre3g01514 406 Pfam S1 RNA binding domain 178 244 IPR003029 GO:0003676
Trre3g01514 406 Pfam S1 RNA binding domain 256 325 IPR003029 GO:0003676
Trre3g01514 406 FunFam 30S ribosomal protein S1 253 332 - -
Trre3g01514 406 CDD S1_RPS1_repeat_ec2_hs2 180 244 - -
Trre3g01514 406 FunFam 30S ribosomal protein S1 77 173 - -
Trre3g01514 406 SUPERFAMILY Nucleic acid-binding proteins 86 186 IPR012340 -
Trre3g01514 406 SUPERFAMILY Nucleic acid-binding proteins 256 335 IPR012340 -
Trre3g01514 406 ProSiteProfiles S1 domain profile. 180 244 IPR003029 GO:0003676
Trre3g01514 406 CDD S1_RPS1_repeat_hs4 257 325 - -
Trre3g01514 406 PANTHER 30S RIBOSOMAL PROTEIN S1 75 394 - -
Trre3g01514 406 Gene3D - 75 173 IPR012340 -
Trre3g01514 406 Gene3D - 174 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01514 Trre-Chr3 11837948 11841411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01514 K02945 - gmx:100806905 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01514 3 11837948 11841411 Trre3g01514 3 11837948 11841411 ECH