Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0012 ATGATGTCGGTGGCGGATTCGAATAAGGATGGGTTCGTGGGGTACGATGAGTTTGAACACGTGTTGGGCTGCCGGAGAAGTCCGAGGAACAAGGGCCACGACGTCGCTGGGGTGATGGAGGATGTGTGTAAGGTTATGGACAGGGACGACGACGGCAAAGTAGGGCTCGAGGATTTGAAGAGCTATATGAATTGGGCCGGGTTTTCTGCAACTGAGGAAGAAATCAAGGCCATGATCAAATTGGGCGGCGGTGATGAAGATAGTGGTGTATCCTATGATGGTCTGCTCAAGATCCTGGGCGTTGATTATGTTAACTAA 318 0.5094 MMSVADSNKDGFVGYDEFEHVLGCRRSPRNKGHDVAGVMEDVCKVMDRDDDGKVGLEDLKSYMNWAGFSATEEEIKAMIKLGGGDEDSGVSYDGLLKILGVDYVN* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0012 105 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Vvi5g0012 105 SUPERFAMILY EF-hand 1 99 IPR011992 -
Vvi5g0012 105 ProSiteProfiles EF-hand calcium-binding domain profile. 1 28 IPR002048 GO:0005509
Vvi5g0012 105 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Vvi5g0012 105 Gene3D - 1 102 - -
Vvi5g0012 105 ProSitePatterns EF-hand calcium-binding domain. 6 18 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0012 Vvi-Chr5 98796 99113 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0012 1 100 EF-hand Containing Proteins AT5G49480 57.000 4.26e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0012 K02183 - vvi:100253434 219.164