Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01498 ATGCATTTGAAGCATTTGAGAGAATCAAACACCCCCTTAATTGACATTGATTCCCTTCGATCTTCCATGGTTGAACGATATCGTAATTTCCTTTTCATTTCGATAATTCCACGCCTTATCTATCAAAACACAAACACTATACTGTACAAAGGAGCCATGCCTACGGCTATGGCGATGATGGCGTCGCAGTTGCGGTGGGGGTGGAGACCGCCGCCGAAGGAACAACGGCGTCGTATGGCTCCTGTGGTGTGTTCCGTGGCTACGGAGAACGCGCAGAAAAAAGAGAGAGCGAAACTGAAGAAGCTCTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTCTCCTTCACTCTCCAACAATTCACTGACGCTCTGGACAAGTACGACTACGAATCCGAAGTTGGCTCTAAGGCACGCTTCCTTCCCTTTACCCTCCTAAAATTTGGCAGAGACCCTAAATATCTAGTTAAGGGCACTGTTTTTGCCACAGATGCTAGTGGAGCTTATGTTGACATTACTGCAAAGTCCACAGCTTACTTGCCCCTACAAGAGGCTTGCATCCAAAAAATTAAGAAAGTGGAAGAAGCAGGTATAGTTCCTGGCTTAAGGGAGGAATTTATGATCATTGGTGATAATGGAACGGATGATACCTTGATCCTGAGTTTGAGGTCTATCCAATATGACCTTGCATGGGAACGCTGTAGACAACTTCAGTCCGAAGATGCTGTTGTCAAGGGTAAGGTTGTCAATGCAAACAAAGGTGGTCTGGTGGCTCAAGTCGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCAACGAAATCAACTGGAGAAGAGCTTCTTGAGCAGGAGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTCCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGTTGGGAATTGGATCAGTTGTCACTGGCTCTGTTCAAAGCATAAAGCCATACGGTGCCTTCGTTGACATTGGTGGAATTAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGCAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGACGAGTAAGTCTTTCCACAAAGAAGTTGGAACCCTCACCTGGTGACATGATTCGCAATCCCAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTTAGACAGAGAATCGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCGGAGAGTGGATTAACTCTCAGCGGTGATGCAATCTTAGGACCACTTTCTTCAGACTTACCTCCAGAGGGAGTGGATCTGAGTGAGGTACCCCCAGCTGAAGATTCATGA 1419 0.4708 MHLKHLRESNTPLIDIDSLRSSMVERYRNFLFISIIPRLIYQNTNTILYKGAMPTAMAMMASQLRWGWRPPPKEQRRRMAPVVCSVATENAQKKERAKLKKLFEEAYERCRTAPTEGVSFTLQQFTDALDKYDYESEVGSKARFLPFTLLKFGRDPKYLVKGTVFATDASGAYVDITAKSTAYLPLQEACIQKIKKVEEAGIVPGLREEFMIIGDNGTDDTLILSLRSIQYDLAWERCRQLQSEDAVVKGKVVNANKGGLVAQVEGLKGFVPFSQISTKSTGEELLEQEIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAFVDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPSPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGDAILGPLSSDLPPEGVDLSEVPPAEDS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01498 472 SMART S1_6 320 390 IPR022967 -
Spst6g01498 472 SMART S1_6 155 227 IPR022967 -
Spst6g01498 472 SMART S1_6 243 309 IPR022967 -
Spst6g01498 472 ProSiteProfiles S1 domain profile. 157 227 IPR003029 GO:0003676
Spst6g01498 472 CDD S1_RPS1_repeat_ec2_hs2 245 309 - -
Spst6g01498 472 ProSiteProfiles S1 domain profile. 322 390 IPR003029 GO:0003676
Spst6g01498 472 SUPERFAMILY Nucleic acid-binding proteins 240 313 IPR012340 -
Spst6g01498 472 Coils Coil 407 427 - -
Spst6g01498 472 SUPERFAMILY Nucleic acid-binding proteins 321 400 IPR012340 -
Spst6g01498 472 PANTHER 30S RIBOSOMAL PROTEIN S1 90 459 - -
Spst6g01498 472 CDD S1_RPS1_repeat_hs4 322 390 - -
Spst6g01498 472 FunFam 30S ribosomal protein S1, chloroplastic 238 315 - -
Spst6g01498 472 Gene3D - 318 398 IPR012340 -
Spst6g01498 472 FunFam 30S ribosomal protein S1 318 397 - -
Spst6g01498 472 Gene3D - 238 317 IPR012340 -
Spst6g01498 472 ProSiteProfiles S1 domain profile. 245 309 IPR003029 GO:0003676
Spst6g01498 472 MobiDBLite consensus disorder prediction 446 472 - -
Spst6g01498 472 Gene3D - 155 237 IPR012340 -
Spst6g01498 472 Pfam S1 RNA binding domain 244 309 IPR003029 GO:0003676
Spst6g01498 472 Pfam S1 RNA binding domain 321 390 IPR003029 GO:0003676
Spst6g01498 472 SUPERFAMILY Nucleic acid-binding proteins 158 253 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01498 Spst-Chr6 14050109 14054643 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01498 K02945 - gmx:100806905 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01498 6 14050109 14054643 Spst6g01498 6 14050109 14054643 ECH
Spst3g02901 3 78630856 78634070 Spst6g01498 6 14050109 14054643 PCT