Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01132 ATGCCGATGGCGATGACGGCGTCGCAGTTGCAGTGGGGATGGAGGCCGCCGCCGAAGCAGCAACGGCGTCGTATGGCTCCGGTGGTGTGTTCCGTGGCCACAGAGATCGCGCAGAAAAAAGAGAGAGTGAGACTGAAACAGCTTTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCTACCGAAGGCGTCTCCTTCACTCTCCAGCAATTCAGCGACGCTCTCGAGAAATACGACTACGAATCCGAAGTTGGCGCAAAGGTTAAGGGCACTGTTTTTGCCACAGATGCGAGTGGAGCTTATGTTGACATTACTGCAAAGTCCACAGCCTACTTACCCCTGCAAGAGGCGTGCATCCACAAAATTAAGAAAGTGGAAGAAGCAGGTATAGTTCCTGGCTTGAGGGAGGAATTTATGATCATTGGTGAGAATGGAACGGATGATACATTGATCCTGAGTATGAGGTCTATCCAATATGACCTTGCATGGGAACGCTGTAGACAACTTCAGTCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTCAGTGCAAATAGAGGTGGTCTGGTGGCTCAAGTGGAAGGCCTCAAGGGGTTTGTTCCATTTTCACAGATATCAGCGAAATCAACTGGAGAAGAGCTTCTTGAGCAGGAGATTCCTTTTAAGTTTGTGGAAGTGGATGAGGAACAGTCTAGACTTGTCCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGTTAGGAATTGGATCAGTAGTCGTTGGGTCTGTTCAAAGCATAAAGCCATACGGTGCCTTCGTTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACCGATATTGCAACTGTTCTTCAACCTGGTGATATTCTGAAGGTAATGATCTTAAGTCATGATCGGGAGCGAGGACGAGTAAGTCTTTCCACAAAGAAGTTGGAACCCTCACCTGGTGACATGATTCGCAACCCAAAGCTTGTTTTTGAGAAGGCGGAGGAGATGGCTCAGACCTTCAGACAGAGAATCGCACAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAAGTCTCAGCGGTGATGGAATCTTAGGACCACTTTCTTCAGACTTGCCTCCAGAGGGAGTGGATCTGAGTGAGGTACACCTGGCTGAGGATTCATGA 1203 0.4929 MPMAMTASQLQWGWRPPPKQQRRRMAPVVCSVATEIAQKKERVRLKQLFEEAYERCRTAPTEGVSFTLQQFSDALEKYDYESEVGAKVKGTVFATDASGAYVDITAKSTAYLPLQEACIHKIKKVEEAGIVPGLREEFMIIGENGTDDTLILSMRSIQYDLAWERCRQLQSEDAVVKGKVVSANRGGLVAQVEGLKGFVPFSQISAKSTGEELLEQEIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVVGSVQSIKPYGAFVDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPSPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLSLSGDGILGPLSSDLPPEGVDLSEVHLAEDS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01132 400 Gene3D - 68 165 IPR012340 -
Phco11g01132 400 SUPERFAMILY Nucleic acid-binding proteins 71 180 IPR012340 -
Phco11g01132 400 CDD S1_RPS1_repeat_hs4 250 318 - -
Phco11g01132 400 Gene3D - 166 243 IPR012340 -
Phco11g01132 400 PANTHER 30S RIBOSOMAL PROTEIN S1 38 387 - -
Phco11g01132 400 SUPERFAMILY Nucleic acid-binding proteins 249 328 IPR012340 -
Phco11g01132 400 CDD S1_RPS1_repeat_ec2_hs2 173 237 - -
Phco11g01132 400 FunFam 30S ribosomal protein S1, chloroplastic 167 243 - -
Phco11g01132 400 FunFam 30S ribosomal protein S1 69 166 - -
Phco11g01132 400 Gene3D - 244 323 IPR012340 -
Phco11g01132 400 Coils Coil 335 355 - -
Phco11g01132 400 ProSiteProfiles S1 domain profile. 85 155 IPR003029 GO:0003676
Phco11g01132 400 MobiDBLite consensus disorder prediction 378 400 - -
Phco11g01132 400 Pfam S1 RNA binding domain 172 237 IPR003029 GO:0003676
Phco11g01132 400 Pfam S1 RNA binding domain 249 318 IPR003029 GO:0003676
Phco11g01132 400 ProSiteProfiles S1 domain profile. 173 237 IPR003029 GO:0003676
Phco11g01132 400 PRINTS Ribosomal protein S1 signature 85 103 IPR035104 -
Phco11g01132 400 PRINTS Ribosomal protein S1 signature 176 192 IPR035104 -
Phco11g01132 400 PRINTS Ribosomal protein S1 signature 221 241 IPR035104 -
Phco11g01132 400 PRINTS Ribosomal protein S1 signature 103 117 IPR035104 -
Phco11g01132 400 PRINTS Ribosomal protein S1 signature 152 171 IPR035104 -
Phco11g01132 400 SMART S1_6 83 155 IPR022967 -
Phco11g01132 400 SMART S1_6 248 318 IPR022967 -
Phco11g01132 400 SMART S1_6 171 237 IPR022967 -
Phco11g01132 400 FunFam 30S ribosomal protein S1 246 325 - -
Phco11g01132 400 ProSiteProfiles S1 domain profile. 250 318 IPR003029 GO:0003676
Phco11g01132 400 SUPERFAMILY Nucleic acid-binding proteins 168 241 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01132 Phco-Chr11 8413104 8416651 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01132 11 8413104 8416651 Phco11g01132 11 8413104 8416651 ECH
Phco8g02095 8 22355523 22362883 Phco11g01132 11 8413104 8416651 PCT