Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01147 ATGCCGATGGCGATTACGGCGTCGCAGTTGCGGTGGGGATGGAGGCCGCCGCCGAAGCATCAACGGCGTCCTATGGCTCCGGTGGTCTGTTCAGTGGCTATAGAGAACGCGCAGAAGAAAGAGAGAGCGAGACTAAAAACACTTTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCCACTGAAGGCGTCTCCTTCAGCCTCCAGCAATTCACGGACGCTCTCGACAAATATGACTACGAATCCGAAGTTGGCACTAAGGTTAAGGGCACTGTTTTTGCCACAGATGCGGGTGGAGCTTATGTTGACATTACTGCAAAGTCCACAGCCTACTTGCCGCTGCAAGAGGCTTGCATTAGCAGAATTAAGAAAGTTGAAGAAGCAGGTATAGTTCCTGGGTTGAGGGAGGAATTTATGATCATTGGTGAGAATGGAACGGATGATACATTGATCCTGAGTTTGAGGTCTATCCAATATGACCTTGCATGGGAGCGCTGTAGACAACTGCAGGCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTCAGTGCAAACAAAGGCGGTCTGGTGGCTCAAGTGGAAGGCCTCAAGGGTTTTGTTCCATTTTCACAGATATCAGCGAAATCAACTGGAGAAGAGCTTCTTGAGCAGGAGATTTCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTCCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGTTAGGAATTGGATCCGTAGTCATTGGCTCTGTTCAAAGCATAAAGCCATACGGTGCCTTCGTTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGACATTGCGACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGATAGGCAGAGAGGACGTGTAAGTCTTTCCACAAAGAAGTTGGAACCCTCACCTGGTGACATGATTCGCAACCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATCGCACAAGCAGAAGCTATGGCTCGTGCTGATATGCTCAGGTTCCAGCCAGAGGGTGGATTAGGTCTCAGCGGTGAGGGAATCTTAGGACCACTTTCTTCAGACTTGCCTCCAGAGGGAGTGAATCTGAGTGAGGTACCCCTGGCTGAAGAGTCATGA 1203 0.4946 MPMAITASQLRWGWRPPPKHQRRPMAPVVCSVAIENAQKKERARLKTLFEEAYERCRTAPTEGVSFSLQQFTDALDKYDYESEVGTKVKGTVFATDAGGAYVDITAKSTAYLPLQEACISRIKKVEEAGIVPGLREEFMIIGENGTDDTLILSLRSIQYDLAWERCRQLQAEDAVVKGKVVSANKGGLVAQVEGLKGFVPFSQISAKSTGEELLEQEISFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVIGSVQSIKPYGAFVDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRQRGRVSLSTKKLEPSPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPEGGLGLSGEGILGPLSSDLPPEGVNLSEVPLAEES 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01147 400 Pfam S1 RNA binding domain 171 237 IPR003029 GO:0003676
Vian6g01147 400 Pfam S1 RNA binding domain 249 318 IPR003029 GO:0003676
Vian6g01147 400 SUPERFAMILY Nucleic acid-binding proteins 168 241 IPR012340 -
Vian6g01147 400 CDD S1_RPS1_repeat_hs4 250 318 - -
Vian6g01147 400 MobiDBLite consensus disorder prediction 379 400 - -
Vian6g01147 400 CDD S1_RPS1_repeat_ec2_hs2 173 237 - -
Vian6g01147 400 FunFam 30S ribosomal protein S1, chloroplastic 167 243 - -
Vian6g01147 400 SUPERFAMILY Nucleic acid-binding proteins 249 328 IPR012340 -
Vian6g01147 400 PANTHER 30S RIBOSOMAL PROTEIN S1 39 387 - -
Vian6g01147 400 FunFam 30S ribosomal protein S1 69 166 - -
Vian6g01147 400 Coils Coil 335 355 - -
Vian6g01147 400 FunFam 30S ribosomal protein S1 246 325 - -
Vian6g01147 400 Gene3D - 246 326 IPR012340 -
Vian6g01147 400 ProSiteProfiles S1 domain profile. 250 318 IPR003029 GO:0003676
Vian6g01147 400 Gene3D - 166 245 IPR012340 -
Vian6g01147 400 SMART S1_6 248 318 IPR022967 -
Vian6g01147 400 SMART S1_6 171 237 IPR022967 -
Vian6g01147 400 SMART S1_6 83 155 IPR022967 -
Vian6g01147 400 SUPERFAMILY Nucleic acid-binding proteins 73 180 IPR012340 -
Vian6g01147 400 Gene3D - 68 165 IPR012340 -
Vian6g01147 400 ProSiteProfiles S1 domain profile. 85 155 IPR003029 GO:0003676
Vian6g01147 400 ProSiteProfiles S1 domain profile. 173 237 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01147 Vian-Chr6 29061403 29065355 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01147 K02945 - gmx:100806905 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01147 6 29061403 29065355 Vian6g01147 6 29061403 29065355 ECH
Vian1g00382 1 3405792 3409014 Vian6g01147 6 29061403 29065355 PCT