Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04139 ATGGTCATGGGCATGGCGTCTGTGGCTCAGCAGTTGAGTGGTGTTCGGTGGTCTCCAGTGCTATGGAGGCCGACCCAGAAGCAGAGGAGAGGTGTTCTTCCCATAGTGTGTTCCGTGGCACTCGCCAACGCACAGAACAAAGAGAGATTGAAGCTCAAAGAGCTCTTCGAAGAAGCCTATGAAAGGTGCCGCACTGCTCCCATGGAAGGCGTTTCCTTCACTCTAGAACAATTCACTTCCGCTCTAGATAAGTATGATTTCGATGCTGAAATTGGGACCAAGATAAAGGGCACTGTGTTTGGCACTGATGCCGGTGGAGCTTTTGTTGACATTACTGCAAAGTCTACAGCATACTTGCCTCTGCAAGAGGCATGCATTCACAGAATTAAGCATGTGGAAGAAGCAGGCATAACTGCTGGCTTGAGAGAGGAATTTGTAGTCATTGGTGAAGTCGAAGCTGATGATACCTTGATCTTGAGTTTAAGGTCTATCCAGTATGATCTTGCATGGGAACGCTGTAGACAACTTCAGGCAGAAGATGCTGTTGTCAAGGGTAAGATTGTTAATGCAAACAAAGGTGGTGTGGTAGCTGAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTCTCACAAATATCAACGAAATCACCTGGAGAAGAGCTTCTTGAGATGGAGATTCCTCTGAAGTTTGTGGAGGTGGATGAGGAACAGGCCAGACTTATCCTCAGTCACCGCAAAGCTGTGGCTGACAGCCAGGGACAGCTCGGAATTGGATCAGTAGTCACTGGCACTGTGCAAAGCCTAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATGAGTGGCCTCCTTCATGTCAGTCAGATCAGTCACGATCGTATAACTGATATTGCAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGCCGAGTAAGTCTTTCCACAAAGAAGTTGGAACCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAAAAGGCGGAGGAGATGGCTCAAACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCCCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACCCTCAGCAGTGATGGGATCTTAGGACCACTTTCTTCAGACTTGCCTGCAGAGGGACTGGATCTTAGTGAGGTACCCCCAGCTGAAGATTCATGA 1224 0.4788 MVMGMASVAQQLSGVRWSPVLWRPTQKQRRGVLPIVCSVALANAQNKERLKLKELFEEAYERCRTAPMEGVSFTLEQFTSALDKYDFDAEIGTKIKGTVFGTDAGGAFVDITAKSTAYLPLQEACIHRIKHVEEAGITAGLREEFVVIGEVEADDTLILSLRSIQYDLAWERCRQLQAEDAVVKGKIVNANKGGVVAEVEGLKGFVPFSQISTKSPGEELLEMEIPLKFVEVDEEQARLILSHRKAVADSQGQLGIGSVVTGTVQSLKPYGAFIDIGGMSGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSSDLPAEGLDLSEVPPAEDS. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04139 407 FunFam 30S ribosomal protein S1 76 173 - -
Seca6g04139 407 SUPERFAMILY Nucleic acid-binding proteins 256 335 IPR012340 -
Seca6g04139 407 Gene3D - 173 253 IPR012340 -
Seca6g04139 407 ProSiteProfiles S1 domain profile. 257 325 IPR003029 GO:0003676
Seca6g04139 407 ProSiteProfiles S1 domain profile. 92 162 IPR003029 GO:0003676
Seca6g04139 407 MobiDBLite consensus disorder prediction 379 407 - -
Seca6g04139 407 ProSiteProfiles S1 domain profile. 180 244 IPR003029 GO:0003676
Seca6g04139 407 Coils Coil 342 362 - -
Seca6g04139 407 CDD S1_RPS1_repeat_ec2_hs2 180 244 - -
Seca6g04139 407 Pfam S1 RNA binding domain 178 244 IPR003029 GO:0003676
Seca6g04139 407 Pfam S1 RNA binding domain 256 325 IPR003029 GO:0003676
Seca6g04139 407 SUPERFAMILY Nucleic acid-binding proteins 87 187 IPR012340 -
Seca6g04139 407 Gene3D - 254 333 IPR012340 -
Seca6g04139 407 SUPERFAMILY Nucleic acid-binding proteins 175 248 IPR012340 -
Seca6g04139 407 Gene3D - 75 172 IPR012340 -
Seca6g04139 407 PANTHER 30S RIBOSOMAL PROTEIN S1 48 394 - -
Seca6g04139 407 SMART S1_6 178 244 IPR022967 -
Seca6g04139 407 SMART S1_6 255 325 IPR022967 -
Seca6g04139 407 SMART S1_6 90 162 IPR022967 -
Seca6g04139 407 FunFam 30S ribosomal protein S1 253 332 - -
Seca6g04139 407 CDD S1_RPS1_repeat_hs4 257 325 - -
Seca6g04139 407 FunFam 30S ribosomal protein S1, chloroplastic 174 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04139 Seca-Chr6 109130651 109134711 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04139 K02945 - gmx:100806905 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04139 6 109130651 109134711 Seca6g04139 6 109130651 109134711 ECH
Seca12g00467 12 4097755 4101070 Seca6g04139 6 109130651 109134711 PCT