Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09553 ATGGCCATGGCGTCTGTGGCTCAGCAACTCACGGGTGTAAAATGCACCCCTCTTCTATGGAAACCAACTATAGCCCAAAAGCAAAGACGCAGTGGTGTTCTTCCTATTGTATGTTCCATTGCAATTTCAAGTGCAAATAACAGAGAAAGAATAAAGTTGAAACAACTCTTTGATGATGCTTATGAGAGGTGCCGCACTGCTCCAATGGAGGGTGTTTCCTTTTCTTTTGATCAGTTTACTGAAGCTCTCGAGAAATATGACTATGAGTCTGAAATTGGGACTAAGGTTACTGGCACTGTGTTTGGCACTGATACTAATGGAGCTTATGTTGACATTGCTTCAAAATCCACAGCTTACTTGCCGGTGCGAGAGGCATGCATCCGTAAAATTAAGCATGTAGAAGATGTGGGCATGTTTAATGGCGTGAGTGAGGAATTTGTAGTCATTGGTAAAAATGAAATTGATGATGGCATGATCTTGAGTTTAAGATCTATCCAGTATGACCTTGCTTGGGAACGTTGTAGACAGCTTCAAGCGGAAGATGCTGTTGTGAAGGGTAAGATTATTGATGCAAATAAAGGTGGTGTTGTGGCTGAAGTTGAAGGCCTTAAAGGATTTGTTCCGTTCTCGCAGATGTCAACGAAAATACCAGGAGAAGAGATTATTGAGATGGACATTCCTCTGAAGTTTGTCGAGGTGGATGAGGAACAGTCCAGACTTGTCCTTAGCCACCGCAAAGCTGTAGCCGGCATTCAGGGACAATTAGGAATTGGATCAGTAGTTACTGGCACTGTGCAAAGTCTAAAGCCATATGGTGCTTTCGTTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAAATCAGTCATGATCGTATATCGGATATTGCAACTGTTCTTCAATCTGGGGATATTTTGAAGGTGATGATCTTAAGTCATGATCGAGAGAGAGGCCGAGTAAGTCTTTCAACAAAGAAGTTGGAACCTACACCTGGAGACATGATTCGTAATCCAACGCTTGTGTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCGCAAGCAGAAGCCATGGCTCGCGCTGATATGCTTAGGTTCCAACCAGAGAGTGGATTAACTCTAAGCAGCGACGGAATCTTAGGACCACTTGGTTCAGAATTGCCTGCAGAGGGACTGGATCTAAGTGAAATACCCCCAGCTGAAGATTAA 1224 0.4395 MAMASVAQQLTGVKCTPLLWKPTIAQKQRRSGVLPIVCSIAISSANNRERIKLKQLFDDAYERCRTAPMEGVSFSFDQFTEALEKYDYESEIGTKVTGTVFGTDTNGAYVDIASKSTAYLPVREACIRKIKHVEDVGMFNGVSEEFVVIGKNEIDDGMILSLRSIQYDLAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTKIPGEEIIEMDIPLKFVEVDEEQSRLVLSHRKAVAGIQGQLGIGSVVTGTVQSLKPYGAFVDIGGISGLLHVSQISHDRISDIATVLQSGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELPAEGLDLSEIPPAED 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09553 407 Coils Coil 343 363 - -
Vifa1g09553 407 FunFam 30S ribosomal protein S1, chloroplastic 175 251 - -
Vifa1g09553 407 CDD S1_RPS1_repeat_hs4 258 326 - -
Vifa1g09553 407 ProSiteProfiles S1 domain profile. 181 245 IPR003029 GO:0003676
Vifa1g09553 407 CDD S1_RPS1_repeat_ec2_hs2 181 245 - -
Vifa1g09553 407 FunFam 30S ribosomal protein S1 77 174 - -
Vifa1g09553 407 SUPERFAMILY Nucleic acid-binding proteins 76 188 IPR012340 -
Vifa1g09553 407 Gene3D - 75 173 IPR012340 -
Vifa1g09553 407 Pfam S1 RNA binding domain 179 245 IPR003029 GO:0003676
Vifa1g09553 407 Pfam S1 RNA binding domain 257 326 IPR003029 GO:0003676
Vifa1g09553 407 Gene3D - 254 334 IPR012340 -
Vifa1g09553 407 FunFam 30S ribosomal protein S1 254 333 - -
Vifa1g09553 407 PANTHER 30S RIBOSOMAL PROTEIN S1 21 395 - -
Vifa1g09553 407 SUPERFAMILY Nucleic acid-binding proteins 176 248 IPR012340 -
Vifa1g09553 407 Gene3D - 174 252 IPR012340 -
Vifa1g09553 407 ProSiteProfiles S1 domain profile. 258 326 IPR003029 GO:0003676
Vifa1g09553 407 SUPERFAMILY Nucleic acid-binding proteins 257 336 IPR012340 -
Vifa1g09553 407 SMART S1_6 179 245 IPR022967 -
Vifa1g09553 407 SMART S1_6 91 163 IPR022967 -
Vifa1g09553 407 SMART S1_6 256 326 IPR022967 -
Vifa1g09553 407 ProSiteProfiles S1 domain profile. 93 163 IPR003029 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09553 K02945 - gmx:100810511 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09553 1 1530484475 1530486543 Vifa1g09553 1 1530484475 1530486543 ECH