Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02941 ATGGCCATGGCGTCTGTGGCTCAGCAACTCACCGGTGTAAAATGGACCCCTCTTCTCTGGAAACCAACTCTAGCTCAAAAGCAAAGACGCAGTGGTGCTCTTCCCATTGTATGTTCCATTGCAATTTCAAGTGCAAATAACAAAGAAAGAATCAAGCTGAAACAACTCTTTGAAGATGCTTATGACAGGTGCCGCACTGCTCCAATGGAGAGTGTTTCGTTTACCGTTGATCAGTTTTCTGAAGCTCTCGAGAAATTTGACACTGAGACTGAAATTGGGAGTAAGGTTCTGGGCACTGTGTTTGGCACGGATACTATTGGAGCTTTTGTTGATATTACTGCAAAGTCCACGGCTTACTTGCCGTTGCAAGAGGCAAGCATCCGTAGAATTAAGCATGTAGAAGAAGCGGGCATATTTACTGGTGTGAAAGAGGAATTTCTAATCATTGGTCAAAATGAAGTTGACGATGGCATGATCTTGAGTTTAAGAACTCTCCAGTATGACCTTGCGTGGGAACGTTGTAGACAGCTTCAAGCAGAAGATGCTGTTGTGAAGGGTAAGCTTATTGAAGCAAATAAAGGTGGTGTGGTGGCTGAAGTTGAAGGCCTTAAAGGATTCGTTCCGTTCTCACAGATTACAACGAAAACACCGGGAGAAGAGATAATTGAGATGGAGATTCCTCTAAAGTTTGTGGAGGTGGATGAGGAACAATCCAGACTTGTCCTCAGTCACCGCAAAGCTGTGGCCGGTTCCCAAGGACAATTAGGAATTGGATCAGTAGTCACTGGCGTTGTGCAAAGCCTTAAGCCATATGGTGCTTTCGTTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGATCGTATATCGGATATTGAGACTGTTCTTCAACCCGGTGATAGTTTGAAGGTGATGATCTTAAGTCATGATCGAGAGAGAGGCCGAGTAAGTCTTTCAACAAAGAAGTTGGAACCTACACCTGGTGACATGATTCGTAATCCAACGCTTGTGTTCGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCGCAAGCAGAAGCCATGGCTCGTGCGGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTTTTAGCAACGACGGCATCTTAGGACCACTTGGTTCAGATTTGCCTGCAGAGGGACTGGATCTAAGTGAAATACCACCAGCTGAAGATTAA 1224 0.4534 MAMASVAQQLTGVKWTPLLWKPTLAQKQRRSGALPIVCSIAISSANNKERIKLKQLFEDAYDRCRTAPMESVSFTVDQFSEALEKFDTETEIGSKVLGTVFGTDTIGAFVDITAKSTAYLPLQEASIRRIKHVEEAGIFTGVKEEFLIIGQNEVDDGMILSLRTLQYDLAWERCRQLQAEDAVVKGKLIEANKGGVVAEVEGLKGFVPFSQITTKTPGEEIIEMEIPLKFVEVDEEQSRLVLSHRKAVAGSQGQLGIGSVVTGVVQSLKPYGAFVDIGGISGLLHVSQISHDRISDIETVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTFSNDGILGPLGSDLPAEGLDLSEIPPAED 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02941 407 Coils Coil 343 363 - -
Vivi4g02941 407 CDD S1_RPS1_repeat_hs4 258 326 - -
Vivi4g02941 407 CDD S1_RPS1_repeat_ec2_hs2 181 245 - -
Vivi4g02941 407 FunFam 30S ribosomal protein S1, chloroplastic 175 251 - -
Vivi4g02941 407 Gene3D - 254 330 IPR012340 -
Vivi4g02941 407 ProSiteProfiles S1 domain profile. 258 326 IPR003029 GO:0003676
Vivi4g02941 407 Gene3D - 75 174 IPR012340 -
Vivi4g02941 407 Gene3D - 175 253 IPR012340 -
Vivi4g02941 407 SMART S1_6 179 245 IPR022967 -
Vivi4g02941 407 SMART S1_6 256 326 IPR022967 -
Vivi4g02941 407 SMART S1_6 91 163 IPR022967 -
Vivi4g02941 407 SUPERFAMILY Nucleic acid-binding proteins 257 336 IPR012340 -
Vivi4g02941 407 ProSiteProfiles S1 domain profile. 93 163 IPR003029 GO:0003676
Vivi4g02941 407 ProSiteProfiles S1 domain profile. 181 245 IPR003029 GO:0003676
Vivi4g02941 407 SUPERFAMILY Nucleic acid-binding proteins 176 248 IPR012340 -
Vivi4g02941 407 Pfam S1 RNA binding domain 257 326 IPR003029 GO:0003676
Vivi4g02941 407 Pfam S1 RNA binding domain 179 245 IPR003029 GO:0003676
Vivi4g02941 407 PANTHER 30S RIBOSOMAL PROTEIN S1 21 395 - -
Vivi4g02941 407 FunFam 30S ribosomal protein S1 77 174 - -
Vivi4g02941 407 SUPERFAMILY Nucleic acid-binding proteins 84 187 IPR012340 -
Vivi4g02941 407 FunFam 30S ribosomal protein S1 254 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02941 Vivi-Chr4 137360498 137363109 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02941 K02945 - gmx:100806905 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02941 4 137360498 137363109 Vivi4g02941 4 137360498 137363109 ECH
Vivi4g02941 4 137360498 137363109 Vivi4g02941 4 137360498 137363109 PCT