Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01643 ATGGCGACTTTGGTTCAGCAATTCGCTGGTCTGAGACTTCTTCCATCCTCTTCTTCGCGCCTCTCGAAATCATTCACTCAAAAGCAAACGCAGAAGCGCTGTGTGCTGCCAATAGTCTCAGCAGTAGCAATAACCAATGCTGAGACCAGAGAGAGGCAAAAACTCAAAGAGCTATTCGAAGAAGCTAGTGAGAGGTGCCGCACCGCTCCTACAGAAGGTGTTTCCTTCAGTATCGAAGACTTTGCCGCTGCTTTGGACAAATACGACTTTCATAATGAAATTGGGACTACCGTCAAGGGAACTGTAATCGGAATAGATGAAATTGGAGCATTTGTTGACATAAGAGGAAAGTCTGCTGCATACTTGCCACTCGAAGAGGCATGCATTCACAATATCCAATTCATTGAGCAAGCAGGTATTGTTCCTGGATTTAGGGAGGAGTTTCTGGTGGTCGGTGAAAATGAGGACGATGACGGTTTAATATTGAGTTTGAAGGATGCCCAATATGAAGTTGCGTGGGAACGATGCAGACAACTTCAAGCGGAGGATGTTGTCATCAAGGGTAAGATTATTGGTGGAAACAATGGTGGGGTGGTGGCTATGGTGGAAGGTCTTAGAGGATTTGTTCCTTTCTCGCAGATGTCGATGAAATTTGAAGAGGAAGAAGACCTTTATGGTAGGGAACTTTCTTTGAAGTTTATAGAGGTGGATCAGGAACAATCCAGGCTTGTCCTCAGCAACCGCAAAGCAATGGCGGACAGCCAGTCACAACTAGGCATTGGATCAGTGGTCGTTGGCACTGTTGAGAGCATAAAACCATATGGTGCTTTTGTTGATATTGGTGGAATGAACGGACTTTTGCATGTGAGTCAAATTAGTCATGACCGTGTCGTTGACATTTCCACAGTTCTTCAGCCTGGCGATACTCTCAAGGTCATGATATTGAGCCACGATCGTGAGAGAGGCAGAGTAAGTCTTTCGACCAAGAAGTTGGAACCGACTCCTGGTGACATGATTCGCAATCCTACACTTGTTTTCGAGAAGGCCGAGGAGATGGCTCAGACATTTAGGCAGAGAATAGCTCAAGCAGAAGCCATGGCCCGTGCAGACATGCTACGCTTCCAACCTGAGAGTGGATTAACCCTCACTAGTGACGGAATCTTGGGACCTCTCGGTCTTGGTTCAGACTTGCCTCCAGAGGGTCTGGATTTGAGTGATGTTCCTCCTGCGGAAGATATATAA 1242 0.4654 MATLVQQFAGLRLLPSSSSRLSKSFTQKQTQKRCVLPIVSAVAITNAETRERQKLKELFEEASERCRTAPTEGVSFSIEDFAAALDKYDFHNEIGTTVKGTVIGIDEIGAFVDIRGKSAAYLPLEEACIHNIQFIEQAGIVPGFREEFLVVGENEDDDGLILSLKDAQYEVAWERCRQLQAEDVVIKGKIIGGNNGGVVAMVEGLRGFVPFSQMSMKFEEEEDLYGRELSLKFIEVDQEQSRLVLSNRKAMADSQSQLGIGSVVVGTVESIKPYGAFVDIGGMNGLLHVSQISHDRVVDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLTSDGILGPLGLGSDLPPEGLDLSDVPPAEDI* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01643 413 Pfam S1 RNA binding domain 181 246 IPR003029 GO:0003676
Pte2g01643 413 Pfam S1 RNA binding domain 260 329 IPR003029 GO:0003676
Pte2g01643 413 CDD S1_RPS1_repeat_ec2_hs2 198 248 - -
Pte2g01643 413 PANTHER 30S RIBOSOMAL PROTEIN S1 51 397 - -
Pte2g01643 413 Coils Coil 45 65 - -
Pte2g01643 413 Coils Coil 346 366 - -
Pte2g01643 413 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Pte2g01643 413 FunFam 30S ribosomal protein S1 257 336 - -
Pte2g01643 413 SMART S1_6 259 329 IPR022967 -
Pte2g01643 413 SMART S1_6 181 248 IPR022967 -
Pte2g01643 413 SMART S1_6 93 165 IPR022967 -
Pte2g01643 413 PRINTS Ribosomal protein S1 signature 113 127 IPR035104 -
Pte2g01643 413 PRINTS Ribosomal protein S1 signature 186 202 IPR035104 -
Pte2g01643 413 PRINTS Ribosomal protein S1 signature 204 221 IPR035104 -
Pte2g01643 413 PRINTS Ribosomal protein S1 signature 232 252 IPR035104 -
Pte2g01643 413 PRINTS Ribosomal protein S1 signature 162 181 IPR035104 -
Pte2g01643 413 PRINTS Ribosomal protein S1 signature 95 113 IPR035104 -
Pte2g01643 413 ProSiteProfiles S1 domain profile. 261 329 IPR003029 GO:0003676
Pte2g01643 413 FunFam 30S ribosomal protein S1 79 176 - -
Pte2g01643 413 ProSiteProfiles S1 domain profile. 183 248 IPR003029 GO:0003676
Pte2g01643 413 SUPERFAMILY Nucleic acid-binding proteins 260 339 IPR012340 -
Pte2g01643 413 Gene3D - 78 176 IPR012340 -
Pte2g01643 413 Gene3D - 177 254 IPR012340 -
Pte2g01643 413 SUPERFAMILY Nucleic acid-binding proteins 91 190 IPR012340 -
Pte2g01643 413 Gene3D - 255 333 IPR012340 -
Pte2g01643 413 CDD S1_RPS1_repeat_hs4 261 329 - -
Pte2g01643 413 MobiDBLite consensus disorder prediction 391 413 - -
Pte2g01643 413 SUPERFAMILY Nucleic acid-binding proteins 184 254 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01643 Pte-Chr2 35355809 35359608 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01643 K02945 - vvi:100265325 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01643 2 35355809 35359608 Pte2g01643 2 35355809 35359608 RCT