Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03253 ATGAAAATCGTTCGTAAGGACTTCGTGCGCAATGGACCTGGAAGTGTTAAGATGGTTCCAGTAGATTCAGATGATTTATGGTATGCATATAACTTGATAGCTCCTGGTGATTCAATCATGGCAGTTACTATCAGGAAAGTTCTTAGAGAAGCTGCTAATGGTGGAAGAGATGCTGAACGTGTTAAACTTAAATTGGAAATTAAAGTTGAAGATGGTGTGGATTATGATAAAGAAGGATCGGTTTTGCGTGTTCGAGGGAAGAACATTCTAGAGAATGAACATGTCAAGATAGGAGCATTCCATACTTTAGAACTTGAGTTACAGCGACCTTTTGTGATCAGGAAGgaTGTCTGGGATTCTTATGCTTTGGAGGTACTCCAGCAGGCCTCTGATCCTGCTGCAAGTGCTGATCTAGCTGTGGTGTTAATGCAAGAAGGATTAGCCCATATCCTCCTTGTTGGTAGAAGTATGACTGTTACTCGTTCGCGGATAGAAGCTTCAATTCCTCGCAAGCATGGGGCTGCTATTGCTGGTTATGAGAGAGCTTTGAATAAGTTCTTTGAGAATGTTCTGCAGGCATTCTTGAGACATATAGATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCTGGATTTACAAAAGATCAGTTTCATCGTCACTTATTTTTGGAGGCAGAAAGAAGACAGTTGCGACCTATTATTGAAAACAAATCACGCATCATTCTCGCACACACAAGCTCAGGATACAAGCATAGTTTAAAAGAGGTTCTGGATGCTCCAAATGTTATGAGTATGATAAAAGATACTAAGGCAGCACAAGAGgtTCGAATTCTGAAGGAGTTTTACGACATGCTTTCAAATGATTCTTCACGTGCTTGTTATGGAGCAAAACATGTTGAGGTTGCCCATGAACGTCTAGCTGTGCAAACGCTTCTCATTGCAGATTCTCTTTTCAGGAATGTAGATATACCAACGAGGAAAAAGTATGTTAACTTGGTCAATTCAGTTAAGGATTCTGGAGGTTCTGTTCATGTATTTTCATCCATGCATGTCTCTGGAGAACAACTAGAGCAGATAAGTGGCATTGCTGCTATTCTTCGGTTTCCTCTCCCCGATCTTGAAGACATTGAGATGGGTGGATACTTGTGCTCCTGGGCATTTAAATGTAACATTTATACCTCCAAATTCCCATCACCACACTTTGGGTTAGGTTATTGTTGGTTGGTGGGAATAGAGTGGAGGAGAGAAGTTGGGAGCACCATTTTGTCAAGGTTGGTGTGGCTTTGGAATTTTTGTGGGTTAATGTATGATTAA 1317 0.4093 MKIVRKDFVRNGPGSVKMVPVDSDDLWYAYNLIAPGDSIMAVTIRKVLREAANGGRDAERVKLKLEIKVEDGVDYDKEGSVLRVRGKNILENEHVKIGAFHTLELELQRPFVIRKDVWDSYALEVLQQASDPAASADLAVVLMQEGLAHILLVGRSMTVTRSRIEASIPRKHGAAIAGYERALNKFFENVLQAFLRHIDFNVVRCAVIASPGFTKDQFHRHLFLEAERRQLRPIIENKSRIILAHTSSGYKHSLKEVLDAPNVMSMIKDTKAAQEVRILKEFYDMLSNDSSRACYGAKHVEVAHERLAVQTLLIADSLFRNVDIPTRKKYVNLVNSVKDSGGSVHVFSSMHVSGEQLEQISGIAAILRFPLPDLEDIEMGGYLCSWAFKCNIYTSKFPSPHFGLGYCWLVGIEWRREVGSTILSRLVWLWNFCGLMYD 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03253 438 Pfam eRF1 domain 2 138 269 IPR005141 -
Tsu01g03253 438 TIGRFAM pelota: mRNA surveillance protein pelota 1 371 IPR004405 GO:0070481|GO:0070966|GO:0071025
Tsu01g03253 438 SMART eRF1_1_2 1 131 IPR005140 -
Tsu01g03253 438 Pfam eRF1 domain 3 273 371 IPR005142 -
Tsu01g03253 438 SUPERFAMILY L30e-like 265 371 IPR029064 -
Tsu01g03253 438 SUPERFAMILY Translational machinery components 134 272 - -
Tsu01g03253 438 Pfam eRF1 domain 1 1 129 IPR005140 -
Tsu01g03253 438 PANTHER PROTEIN PELOTA HOMOLOG 1 379 - -
Tsu01g03253 438 Gene3D Pelota, domain A 1 133 IPR038069 -
Tsu01g03253 438 PANTHER PELOTA 1 379 IPR004405 GO:0070481|GO:0070966|GO:0071025
Tsu01g03253 438 Gene3D - 271 381 IPR029064 -
Tsu01g03253 438 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 130 IPR038069 -
Tsu01g03253 438 Gene3D eRF1 domain 2 137 270 IPR042226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03253 Tsu-Chr1 40300766 40307193 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03253 K06965 - gmx:100800939 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03253 01 40300766 40307193 Tsu01g03253 01 40300766 40307193 ECH