Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01609 ATGGCAACTGCGGCGGTGCTCCGTTCCCTTCTCCGCCGTTCGCCTCTTTCGTCACTTCTCTATCTACCACGAGTCCTCACTTCTCACTCCCCTTCTCCACTTCCCTCTCCTTTAACACCTCACTCTCCAACCCCCGCCTCTCTCGACACGTTCAGCACACGCGCTTTCTCAACTCGCTCTTTCAATGACCGCGAATCGGAAACTGAATCGTTCGGTCTCGACTCGCCGGTTCACTCCGAGATTCTGAAAGCAGTCGCAGACAGCGCCGGTGCCAGCGGCGAAGACAACCCCGTTTTCCCCATCCGCGCGGTGATTTCATTGCTTGAATCATACCACGATCTTACTGGATTTCCATGGTGGATAACTATAGTTTCGTCTACTTTGGCTCTCAGAATTGTTATGCTTTTTCCGCTTGTTTTTACACTTCACAAGCTTAAAAGGATTGCAGAGTTTGCACCTAAATTGCCCCCTCCATTCCCACCACCTTTCTCAGGAAAGAGTTATATGCGACAGATGTCATTCTTCGAGGAGAAGAGGAAAGCAATTGGATGCCCTTCATATGCATGGCCACTAGTACCATTTATGGTTCAGATTCCCTGCTTTTTCTTGTGGATGATTAGCATAAGGAGGATGTCACTGGATGGTCACCCTGGTTTTGATTGTGGCGGTGCTTTATGGTTTCAGAATTTAACTGAATTCTCTAACGGTTACTCAGGGTTCACCTTTCCTTTTCTGATGGCTAGTTTGCACTACATTATTGTTCAGGTATCCTTTAAGAAACCTTTGGTTGAAGAAACGGAGGACATTTTTGGCTTGTTATCCACTTACTACAAACGATACTTGGACTTTCTAACACTGCCTATAGCTTTCATTGGCTTTTGTATTCCTCAGGGAAGCCAACTCTATTGGATTACTAATAGTTCATTAACACTCGTTCAGCACTTTGCTCTTAGAAATCCCACTATCCTTGCAAAATTGGGTTTACTTGACAAGAATCGTCGAAAAGCAGCTTCCGGGGAAATTGGTGCTTCTGAAACACCCCATTTACTAGACAATAGTACGATAGCAGCTACCAAGGAAAATGTTTCTCCCGAAAAGAACCCTCTGGATTCACCTGAAAAGTGGCAGAAAATACCTATAGAGAACATGTCCCCTGTAGAACTAACCACTCTCGCAGTCCCATTTCTATCTAGTAATGATAAAGAAAGTGCAATACCTTTACTAAAACTAGCACTTGATAAGGACCCTGAATACTTGCGAGCTTTGGTTTTAATGGGACGGGTTCTCTTGCTGAAGCAAATAAATGATGAAGCTGTTGAATACTTTGAGCGTGCAATATCAAAGCTTTCACTGGCTGGCCTACCAACTGATCCAGAAGAGGTTGATTTTTTGATTCTTTCATCTCAATGGGCTGGAATTGCCTGTGAACGACAGGGAAAGAAGGAAGAAGGACGTGTACACTTTGAAAGAGTGGCGAATATGGAAGAGCCCGAAGATCCTACTAGTAAAGGCTATTATTTTGATGGGTTGCTGCTGCTTGCCAGCACTTTATATGATGCTGGTCAAAAGGCTGAAGCTGCAAAGTATCTGCGTCTTGTTGTTGCTTATAATCCTGGTTATAAGAAATTCTTGGAACAATGTGAGAAACATGAAGATTTAGCAACTGATCTTGCCCGTAGTAGGAGAGAATTCTGA 1695 0.4419 MATAAVLRSLLRRSPLSSLLYLPRVLTSHSPSPLPSPLTPHSPTPASLDTFSTRAFSTRSFNDRESETESFGLDSPVHSEILKAVADSAGASGEDNPVFPIRAVISLLESYHDLTGFPWWITIVSSTLALRIVMLFPLVFTLHKLKRIAEFAPKLPPPFPPPFSGKSYMRQMSFFEEKRKAIGCPSYAWPLVPFMVQIPCFFLWMISIRRMSLDGHPGFDCGGALWFQNLTEFSNGYSGFTFPFLMASLHYIIVQVSFKKPLVEETEDIFGLLSTYYKRYLDFLTLPIAFIGFCIPQGSQLYWITNSSLTLVQHFALRNPTILAKLGLLDKNRRKAASGEIGASETPHLLDNSTIAATKENVSPEKNPLDSPEKWQKIPIENMSPVELTTLAVPFLSSNDKESAIPLLKLALDKDPEYLRALVLMGRVLLLKQINDEAVEYFERAISKLSLAGLPTDPEEVDFLILSSQWAGIACERQGKKEEGRVHFERVANMEEPEDPTSKGYYFDGLLLLASTLYDAGQKAEAAKYLRLVVAYNPGYKKFLEQCEKHEDLATDLARSRREF 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01609 564 SMART tpr_5 385 418 IPR019734 GO:0005515
Vifa5g01609 564 SMART tpr_5 419 452 IPR019734 GO:0005515
Vifa5g01609 564 SMART tpr_5 507 540 IPR019734 GO:0005515
Vifa5g01609 564 Gene3D Tetratricopeptide repeat domain 367 563 IPR011990 GO:0005515
Vifa5g01609 564 PANTHER OXA1 74 338 IPR001708 GO:0016020|GO:0032977
Vifa5g01609 564 CDD 5TM_Oxa1-like 116 320 - -
Vifa5g01609 564 SUPERFAMILY TPR-like 386 541 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01609 - - gmx:100797573 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01609 5 466358315 466364810 Vifa5g01609 5 466358315 466364810 ECH