Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0976 ATGAAGATCATCAGGAGAGACTTAGTCGCCAACGGCCCCGGCAGCGTTAAGATGGTGCCGGTCGATTCTGATGATCTTTGGTATGCTTATAACCTAATTGCTCCAGGAGACACAGTTTTGGCTGTTACTGTTAGGAAAGTCCTAAGAGAGGTGGCTTCGGGAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAATATCCTAGAGAATGAATATGTAAAGATAGGGCAATTCCATACTTTAGAAATTGAGCAGCATCGCCCTTTTGTGTTAAGGAAGGTGGTTTGGGACTCATTGGCTTTAGATACACTCAATCAGGCCTCTGATCCTGCTGCAAGTGCTGATTTAGCAGTGGTTTTGATGCAAGAAGGATTAGCACATGTTATCCTCATTGGTAGAAGCCTTACAATTACTCGCTCCCGGATAGAAGCTTCAATTCCTCGCAAACATGGGCCTGCTATTGCTGGTTATGAGGCAGCTTTGAATAAGTTTTTCGAGAATGTTTTACAGGCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCAAGTCCAGGTTTCACCAAGGATCAATTTCATCGTCATTTATTGTTGGAGGCAGAACGAAGACAGCTGAGATCTATTATTGAGAATAAGTCACGCATAATTCTTGTGCATACGTCCTCTGGATACAAGCATAGTTTAAAAGAGGTTTTGGATGCACCAAATGTGATGAACATGATAAAGGATACAAAAGCAGCACAAGAGGTCCAAGCTCTCAAAGATTTTTTCAACATGCTTTCAAATGATCCAGCTCGGGCATGCTATGGACCAAAGCATGTTGAGGTTGCCCATGAAAGAATGGCTGTGCAGACGCTTCTTATAACTGATGATCTCTTCAGGAGTGCTGATATTCCAACAAGGCAAAAATATGTGAATTTTGTCAATTCAGTCAAGGATTCAGGGGGCACTGCTCATATATTCTCATCCATGCATGTGTCAGGAGAACAGCTGGCACAGCTGACTGGAATTGCAGCAATTCTCCGGTTCCCTCTGCCAGACCTGGAAGACATCGAGATGTGA 1137 0.4362 MKIIRRDLVANGPGSVKMVPVDSDDLWYAYNLIAPGDTVLAVTVRKVLREVASGGRDAERVKLKLEIKVEVADYDKVGSVLRIRGKNILENEYVKIGQFHTLEIEQHRPFVLRKVVWDSLALDTLNQASDPAASADLAVVLMQEGLAHVILIGRSLTITRSRIEASIPRKHGPAIAGYEAALNKFFENVLQAFLKYVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRSIIENKSRIILVHTSSGYKHSLKEVLDAPNVMNMIKDTKAAQEVQALKDFFNMLSNDPARACYGPKHVEVAHERMAVQTLLITDDLFRSADIPTRQKYVNFVNSVKDSGGTAHIFSSMHVSGEQLAQLTGIAAILRFPLPDLEDIEM* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0976 378 FunFam Protein pelota homolog 1 131 - -
Vvi4g0976 378 FunFam Protein pelota homolog 270 378 - -
Vvi4g0976 378 Gene3D Pelota, domain A 1 132 IPR038069 -
Vvi4g0976 378 Pfam eRF1 domain 2 137 268 IPR005141 -
Vvi4g0976 378 PANTHER PELOTA 1 378 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vvi4g0976 378 Pfam eRF1 domain 3 272 370 IPR005142 -
Vvi4g0976 378 FunFam Protein pelota homolog 136 269 - -
Vvi4g0976 378 Gene3D - 270 378 IPR029064 -
Vvi4g0976 378 Gene3D eRF1 domain 2 136 269 IPR042226 -
Vvi4g0976 378 SMART eRF1_1_2 1 130 IPR005140 -
Vvi4g0976 378 Pfam eRF1 domain 1 1 128 IPR005140 -
Vvi4g0976 378 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 129 IPR038069 -
Vvi4g0976 378 NCBIfam mRNA surveillance protein pelota 2 370 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vvi4g0976 378 SUPERFAMILY L30e-like 264 370 IPR029064 -
Vvi4g0976 378 SUPERFAMILY Translational machinery components 133 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0976 Vvi-Chr4 16164450 16185486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0976 K06965 - vvi:100256390 737.643