Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1647 ATGACACAAGATGGGATCTTGGAATTGGAGCCAATGAACTCTTACAACCGTCTTCTCTTACATCGCCTTGCTGAGATATTTGGGTTTGCGCATGAATCTGTTGGTGAAGGAGATGATCGGCATTTGATTCTTGAGAGATGTCCAGATACATCTATGCCTTCTATCCTTGTCAGTGATATTCTATGGAAATATGATGAACCTCAATCTTTGATGGAGTCACACGACTCGCATCAAATATTAAGGAGAAAAGAAGCCTCTCCAGTTTCACAGACAAACGCAGCATCCATTCAACAGTCGCTGGAGGAAAGAAAAGCAGCTTATTTTGCTGCTCGTGAGCGGATTTTTTCTCTGAGTTTGGAAGAGGGGAAAGAGCCTGGTGAGCAAAAGCCACGAACTGTGCCTGTGGTTGCCCGCCGTATGATTGCGCATGCATTAGGTCAAAGGATCCATACGAGGAATCAGAATGACTTGGTTAGTGATAGTATGAAGGATAAAGTGCTCACAGATGAATTAAATGGTCAAGATAAGACTAGTGAGAAGTCTAATCTCATGAAGGATTCTGAAGAGTCCTTACACCTGAGAAGAAACTCAAATAGCAAAATAAGAAACACAGGCAGTTCTAATGCTGGCTCGCACCATAAAAGGAATGATCAAACACCTGTTGAGAAACATTTGCCACAATTCTCTCCAAATAGAAAACAAGGGCAAAGTGTGAGTAAAGAGGACATGAAAAAGGAGAACTTAGGAGCTGCGAAGAGAATGTTTGCTCATGCTTTGGGAGTACACTCTGGAAAGGATGGTTCTGTTGCTAGAAATAGAAATGGAGAAATTAATAAGAATTAG 843 0.4164 MTQDGILELEPMNSYNRLLLHRLAEIFGFAHESVGEGDDRHLILERCPDTSMPSILVSDILWKYDEPQSLMESHDSHQILRRKEASPVSQTNAASIQQSLEERKAAYFAARERIFSLSLEEGKEPGEQKPRTVPVVARRMIAHALGQRIHTRNQNDLVSDSMKDKVLTDELNGQDKTSEKSNLMKDSEESLHLRRNSNSKIRNTGSSNAGSHHKRNDQTPVEKHLPQFSPNRKQGQSVSKEDMKKENLGAAKRMFAHALGVHSGKDGSVARNRNGEINKN* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1647 280 ProSiteProfiles SUZ domain profile. 51 119 IPR024771 -
Lja5g1647 280 SUPERFAMILY R3H domain 6 68 IPR036867 GO:0003676
Lja5g1647 280 MobiDBLite consensus disorder prediction 222 236 - -
Lja5g1647 280 Pfam SUZ domain 78 116 IPR024771 -
Lja5g1647 280 MobiDBLite consensus disorder prediction 157 196 - -
Lja5g1647 280 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 6 274 - -
Lja5g1647 280 MobiDBLite consensus disorder prediction 152 280 - -
Lja5g1647 280 CDD R3H 7 46 - -
Lja5g1647 280 MobiDBLite consensus disorder prediction 197 214 - -
Lja5g1647 280 PANTHER RNA-BINDING SUPPRESSOR OF PAS KINASE PROTEIN 1 6 274 - -
Lja5g1647 280 Gene3D - 2 87 IPR036867 GO:0003676
Lja5g1647 280 Pfam R3H domain 5 45 IPR001374 GO:0003676
Lja5g1647 280 ProSiteProfiles R3H domain profile. 1 48 IPR001374 GO:0003676
Lja5g1647 280 MobiDBLite consensus disorder prediction 237 251 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1647 - - gmx:100801478 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1647 5 17827455 17831136 Lja5g1647 5 17827455 17831136 ECH