Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1645 ATGAGAATCGTTCGCAAAGACCTTGTACCCAATGGACCTGGAAGCGTTAAGATGGTGCCAGTGGATCCAGATGATTTATGGTTTGCATATAACTTGATAGCTCCTGGAGATTCAGTCATGGCTGTTACCATCAGGAAGGTTCTTAGAGAAGCTGCTAATGGTGGAAGAGATGCAGAAAGAGTGAAGTTGAAATTGGAAGTTAAAGTTGAACAGGTTGCTGATTATGATAAAGAAGGTTCTCTTTTGCGTGTTCGCGGAAAGAATGTTTTAGAGAATGAACATGTCAAGATTGGAGCATTCCATACTTTAGAACTCGAGCTACAGCGACCTTTTGTGCTCAGAAAGGATGTCTGGGATTCTCTGGCTCTGGAGGTACTCAAGCAGGCTTCTGATCCTGGTGCAAGTGCTGATCTAGCTGTTGTTTTGATGCAAGAAGGATTAGCTCATATCCTCCTTGTTGGTAGAAGTATGACTATTACTCGTTCGCGGATCGAAAGTTCAATTCCTCGTAAGCATGGGCCTGCTATAGCTGGTTATGAGAAAGCTTTGAATAAGTTCTTTGAGAATGTACTGCAGGCTTTCTTGAAACATGTGGATTTCAACGTCGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACGAAAGATCAGTTTCATCGTCACTTATTTTTGGAGGCAGAAAGAAGACAGCTGCGAACTATTATTGAAAACAAGTCACGCATCCTTCTTGTGCACACGACCTCAGGATACAAGCATAGTTTAAGAGAGGTTCTGGATGCTCCAAATGTCATGAATTTGATAAAAGATACAAAGGCAGCGCAAGAGGTTCGAGTTCTGCAGGACTTCTACAACATGCTTTCAAATGATTCAGCACGTGCTTGTTATGGAATGAAACATGTTGAGGTTGCTAATGAACGACTAGCTGTGCAGACTCTTCTAATTACAGATGAACTTTTCAGGAATTCGGATATAGCAGCAAGGAAAAAGTTTGTTAACTTGGTCAATTCAATTAAGGATTCAGGAGGCACCGTCCACGTATTTTCATCCATGCATGTCTCTGGAGAACAGCTAGCACAGATAAGTGGCATTGCTGCAATTCTTCGGTTTCCTCTCCCTGATCTTGAAGACATTGAGATGTGA 1140 0.4211 MRIVRKDLVPNGPGSVKMVPVDPDDLWFAYNLIAPGDSVMAVTIRKVLREAANGGRDAERVKLKLEVKVEQVADYDKEGSLLRVRGKNVLENEHVKIGAFHTLELELQRPFVLRKDVWDSLALEVLKQASDPGASADLAVVLMQEGLAHILLVGRSMTITRSRIESSIPRKHGPAIAGYEKALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLFLEAERRQLRTIIENKSRILLVHTTSGYKHSLREVLDAPNVMNLIKDTKAAQEVRVLQDFYNMLSNDSARACYGMKHVEVANERLAVQTLLITDELFRNSDIAARKKFVNLVNSIKDSGGTVHVFSSMHVSGEQLAQISGIAAILRFPLPDLEDIEM* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1645 379 SUPERFAMILY L30e-like 265 371 IPR029064 -
Lja5g1645 379 Pfam eRF1 domain 3 273 371 IPR005142 -
Lja5g1645 379 Pfam eRF1 domain 1 1 129 IPR005140 -
Lja5g1645 379 SMART eRF1_1_2 1 131 IPR005140 -
Lja5g1645 379 PANTHER PROTEIN PELOTA HOMOLOG 1 379 - -
Lja5g1645 379 PANTHER PELOTA 1 379 IPR004405 GO:0070481|GO:0070966|GO:0071025
Lja5g1645 379 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 131 IPR038069 -
Lja5g1645 379 Pfam eRF1 domain 2 138 269 IPR005141 -
Lja5g1645 379 Gene3D eRF1 domain 2 137 270 IPR042226 -
Lja5g1645 379 TIGRFAM pelota: mRNA surveillance protein pelota 2 371 IPR004405 GO:0070481|GO:0070966|GO:0071025
Lja5g1645 379 Gene3D Pelota, domain A 1 133 IPR038069 -
Lja5g1645 379 SUPERFAMILY Translational machinery components 133 272 - -
Lja5g1645 379 Gene3D - 271 379 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1645 Lja-Chr5 17812753 17818569 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1645 K06965 - gmx:100800939 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1645 5 17812753 17818569 Lja5g1645 5 17812753 17818569 ECH