Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0982 ATGGTTTGTTCCTATTGGCTCCGTGGGAGGTGCAACAGAAACCCTTGTAGGTTCCTGCACCAAGAATTGCCCCAAAACACCCACTATCAAATTTCAAATCAGTTCCGCAAAAACTGCTGGCAGAGGAATCCCGACTCTGATTCGAAGAGTGCATCAAGTTTAACGAGTCTCTATAGGTCATCAGGTTCAACACCTCCGAAGTGTTCATCAGCTTCAAATCAATCCCATAGAAACAACAGGGAGAGGACTCTCTATTCTGACCAGAAGGGTGAATGGGACTCAACTAATCTAAGGTGTTCATCAAGTCCAACAAGAGCAGGAAGTAGCTCTGGAAATGGAATTACACAGAAAGTAATTGGAGAAAGGGTCTGCAAGTACTGGCTACATGGAAATTGTGTGGAGGCAGATAGGTGCCAGTATCTCCATTCATGGTTTAAGGGCCATGGGGTTTTCAAGTTGGCAGAGCTTAATGGGCACATCAAGGCCATCTCAGGAATTGTGCTTCCTTCTGGCTCAGAGAAGCTCTATACTGCCAGTGGAGATGGGTATATACGGGTTTGGGACTGCCATACTGGTCACTGTGATGGTGCAGTCAACCTTGGAGGGGAAATTGGGTCTTTAATCAGTGCGGGCCCATGGGTATTTGCTGGGATAAAAAATGTTGTTAAAGCATGGAATATTGAGTATTGTGCTGATCTCTCTCTGGATGGACCAGTTGGGCAAATTTATGCTATGGTGGTGGATCATGATATGCTCTTCGCAGGGGCAGAGAATGGCACTATATATGCATGGAAACCCAATAAGGAAACCAATGCTTTTGAGCTGGCTACAACATTGGGAGGCCACAATTGTGCTGTGGTTTCGCTCACAGTTGGTGGTGGGAAGCTATATTCTGGTTCCATGGACAATACAATAAGAGTGTGGGATCTTAATACATTACAGTGTATTCATACTCTGAAGGAGCATGCATCAGTTGTGATGTCTCTTGGTTGTTGGGGTCCCTATTTGATATCATGTTCATTGGACCAAACAATTAAGGTTTGGTTTGCTACTGAAGCTGGCAACTTGGAAGTGACCTATACACATAATGAAGAACATGGTGTGCTTGCACTTTTCGGTATGTTCAATTCAGAAGGAAAACCAATATTGTTGTGCTCTTGCAATGACAATTCTGTTCGGCTATATGAATTACCATCATTCACCGAGAGGGCCAGGATTTTTGCAAAGGAAGAAGTCCGAGCGATTCAAATAGGTCCTGGGGGACTCTTTTTCACTGGGGATGGAACTGGACAAGTTGATATTTGGAAATGGCAGGCGGAGCCAACTTCATTGGCATCCTGA 1341 0.4474 MVCSYWLRGRCNRNPCRFLHQELPQNTHYQISNQFRKNCWQRNPDSDSKSASSLTSLYRSSGSTPPKCSSASNQSHRNNRERTLYSDQKGEWDSTNLRCSSSPTRAGSSSGNGITQKVIGERVCKYWLHGNCVEADRCQYLHSWFKGHGVFKLAELNGHIKAISGIVLPSGSEKLYTASGDGYIRVWDCHTGHCDGAVNLGGEIGSLISAGPWVFAGIKNVVKAWNIEYCADLSLDGPVGQIYAMVVDHDMLFAGAENGTIYAWKPNKETNAFELATTLGGHNCAVVSLTVGGGKLYSGSMDNTIRVWDLNTLQCIHTLKEHASVVMSLGCWGPYLISCSLDQTIKVWFATEAGNLEVTYTHNEEHGVLALFGMFNSEGKPILLCSCNDNSVRLYELPSFTERARIFAKEEVRAIQIGPGGLFFTGDGTGQVDIWKWQAEPTSLAS* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0982 446 PANTHER - 14 444 IPR044715 -
Vvi4g0982 446 SMART WD40_4 353 396 IPR001680 GO:0005515
Vvi4g0982 446 SMART WD40_4 312 349 IPR001680 GO:0005515
Vvi4g0982 446 SMART WD40_4 272 309 IPR001680 GO:0005515
Vvi4g0982 446 SMART WD40_4 149 188 IPR001680 GO:0005515
Vvi4g0982 446 SMART WD40_4 399 436 IPR001680 GO:0005515
Vvi4g0982 446 SMART WD40_4 228 265 IPR001680 GO:0005515
Vvi4g0982 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 156 188 - -
Vvi4g0982 446 MobiDBLite consensus disorder prediction 89 112 - -
Vvi4g0982 446 FunFam Zinc finger CCCH domain-containing protein 48 236 444 - -
Vvi4g0982 446 SUPERFAMILY CCCH zinc finger 121 143 IPR036855 GO:0046872
Vvi4g0982 446 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Vvi4g0982 446 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Vvi4g0982 446 PRINTS G protein beta WD-40 repeat signature 175 189 IPR020472 -
Vvi4g0982 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 312 - -
Vvi4g0982 446 SUPERFAMILY WD40 repeat-like 151 438 IPR036322 GO:0005515
Vvi4g0982 446 Pfam WD domain, G-beta repeat 277 309 IPR001680 GO:0005515
Vvi4g0982 446 Pfam WD domain, G-beta repeat 314 348 IPR001680 GO:0005515
Vvi4g0982 446 Pfam WD domain, G-beta repeat 153 188 IPR001680 GO:0005515
Vvi4g0982 446 ProSitePatterns Trp-Asp (WD) repeats signature. 296 310 IPR019775 -
Vvi4g0982 446 ProSiteProfiles Zinc finger C3H1-type profile. 123 145 IPR000571 GO:0046872
Vvi4g0982 446 MobiDBLite consensus disorder prediction 42 112 - -
Vvi4g0982 446 ProSiteProfiles Zinc finger C3H1-type profile. 1 23 IPR000571 GO:0046872
Vvi4g0982 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 318 IPR001680 GO:0005515
Vvi4g0982 446 SMART c3hfinal6 120 144 IPR000571 GO:0046872
Vvi4g0982 446 SMART c3hfinal6 1 22 IPR000571 GO:0046872
Vvi4g0982 446 MobiDBLite consensus disorder prediction 42 79 - -
Vvi4g0982 446 Gene3D - 1 147 - -
Vvi4g0982 446 Gene3D - 152 443 IPR015943 GO:0005515
Vvi4g0982 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 156 188 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0982 Vvi-Chr4 16332377 16334957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0982 214 400 Miscellaneous Gene Families AT5G08390 29.897 3.01e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0982 - - vvi:100244416 923.309