Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00787 ATGGCGACCACGGCGGTTCTCTTTTCTCGCCTCCGCCAAGCGCGGTCGTTCTCCTCCTTCGCCCTACTATCTCTGCCACGCGTCCTATCCTCTCATTGTCCTTCTCCACTCTCCGTTCCCGCCCTACCTTCCTCTCCAACCCTGGGATTCCTCGACGCGTTCCACACACGCGCTTTTTCCACTCGCTCTTCCGATGAGCGCAATTTGGGGTTGGACTCGTTCGTTGTCGACTCGCAGGTTAATGCTGAGCTTCTGAAAGCGATCGCCGATATCAGTGGCGGCAGTGAAGAAGACGCCGTTTTCCCCGTTCGCGTGCTGATTTCGCTGTTCGACTCGTTCCATGAGCTTTCTGGATTTCCGTGGTGGTTAACTATAGTTTCCTCTACTCTAGCTCTCAGAATTGCTATTCTTTTTCCTCTGGTCTTAACACTTCACAAGCTGAAAACGATCGGAGAGTTTTTTCCTAAATTGCCTCCTCCGTTCCCACCACCTTTCTCAGGAAAGAGTTATATCCGTCAGTTTCTGTTCTTCCAGAAGAAGAGAAAAGCTAGTGGATGCCCCTCTTATTTCTGGCCACTGATACCATTCATTGTACAGGTTCCGTGCTTTTTCCTGTGGATGATTAGCATAAGGAAGATGTCACTGAATGGTCACCCTGGTTTTGATTGCGGTGGTGCTCTATGGTTCCAGAATTTATCAGAACTCTCTCACGGTTATTCAGGGTTCATCTTTCCTTTCCTGATTGCTGGTTTGCACTACATCAATGTTCAGATATCCTTTGGGAAACCTGTGGTTGCAGAGACAAGGAATATTTTTGAGTTATTAGCCAAATATTATAAGCGGTACTTGGACTTTCTAACAGTGCCTTTAGCTTTTGTGGGCTTTTGCATTCCTCAGGGGAGCCAGCTCTATTGGGTTACCAATAGCTCATTTACCCTCGTTCAGCAAATAACCCTGAGAAATCCTGCTGTCCTTGCAACGTTGGGGTTACGAGAGAAGAATAGTCAAAAGGTAGCTATTGAGAAAATTGGTGCTTCTAAAACGGCTCCTTCACCAGGGATACAAGATAATATTCCAACAGAAGCTTTTTCTGCAGAAAAAAGTCCTCTGAATTCACCTGAAAAGTGGCATAGAATACCTATAGATGAGATGTCCCCTAAAGAACTGACTGCTCTTGCTGTCCCATTTCTATCCAGTAATGATAAAGAAAGTGCAATTCCCTTACTAAAACTAGCCCTTGATAAGGACCCTGAATATGTTCGAGCTTTAGTTTTGATGGGACGGATTCTATTGTTGAAGCATGCAAATGAGGAGGCTATTGAGTACTTTGAGCGTGCAATTTCAAAACTTTCTTTTACTGGATATCCAACTGATGCGGAAGAACTGGACCTTTTGATTCTTTCATCCCAATGGGCTGGAGTTGCTTGTGAACGACAGGGCAAGAGGAATGAAGGACGGACACACTTTGAAAGAATAGCAAATATGGAGGAGCCAGAAGATCCAACAAGCAAAGGCTATTATTTCGATGGGTTACTGTTGCTTGCCAGCACTCTATTTGATGCGGGCCAAAAGGCCGAAGCTGCGAAGTACCTACGTCTTGTTGTTGTTCATAGACCTGCTTATAAAAAATTCTTGGACCAGTGTGAACAAGATGATGATATTGCGAGCGATCTTGCCCGTAGAAGAGATTACTAA 1695 0.4531 MATTAVLFSRLRQARSFSSFALLSLPRVLSSHCPSPLSVPALPSSPTLGFLDAFHTRAFSTRSSDERNLGLDSFVVDSQVNAELLKAIADISGGSEEDAVFPVRVLISLFDSFHELSGFPWWLTIVSSTLALRIAILFPLVLTLHKLKTIGEFFPKLPPPFPPPFSGKSYIRQFLFFQKKRKASGCPSYFWPLIPFIVQVPCFFLWMISIRKMSLNGHPGFDCGGALWFQNLSELSHGYSGFIFPFLIAGLHYINVQISFGKPVVAETRNIFELLAKYYKRYLDFLTVPLAFVGFCIPQGSQLYWVTNSSFTLVQQITLRNPAVLATLGLREKNSQKVAIEKIGASKTAPSPGIQDNIPTEAFSAEKSPLNSPEKWHRIPIDEMSPKELTALAVPFLSSNDKESAIPLLKLALDKDPEYVRALVLMGRILLLKHANEEAIEYFERAISKLSFTGYPTDAEELDLLILSSQWAGVACERQGKRNEGRTHFERIANMEEPEDPTSKGYYFDGLLLLASTLFDAGQKAEAAKYLRLVVVHRPAYKKFLDQCEQDDDIASDLARRRDY 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00787 564 PANTHER OXA1 85 339 IPR001708 GO:0016020|GO:0032977
Viun5g00787 564 SUPERFAMILY TPR-like 388 541 IPR011990 GO:0005515
Viun5g00787 564 Gene3D Tetratricopeptide repeat domain 373 561 IPR011990 GO:0005515
Viun5g00787 564 CDD 5TM_Oxa1-like 118 322 - -
Viun5g00787 564 Pfam Tetratricopeptide repeat 421 448 IPR019734 GO:0005515
Viun5g00787 564 SMART tpr_5 386 419 IPR019734 GO:0005515
Viun5g00787 564 SMART tpr_5 508 541 IPR019734 GO:0005515
Viun5g00787 564 SMART tpr_5 420 453 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00787 - - gmx:100797573 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00787 5 4942548 4949586 Viun5g00787 5 4942548 4949586 ECH