Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0977 ATGGCCACCTCGGAGAAGCTCCTCACACACCTCCGACGACGACGTTTCCGTGAAATCTCCTCTCTTTCTAACTCGCTCTCCTTTGCCGTCCCTCCTCCAATCTCACATCGCAGCCTCATAAACCCTAATTCTCACTATCAGCTTCACCATCATGGCTTGTTTAAATCCAGACATAATCTTTATTTTCCGTCAAATCTCATCTCACTTGCGCCATTCAGCTTCTCTCACTCGCGGTCCTTCTCCAGCGGTGATTCGGACTACGTGGGAACGGACGTTGCTGTCGAGTCGGCCATTGAGTCGATTCCTCCAGTTCGTTTTCTGGTTTCATTGCTGGATGGATACCATGATGTTACTGGATGGCCTTGGTGGATAATAATTGCTTCCTCTACTTTGGCTCTCAGAATTGCACTATTCCCCATTTTGGTGCTGCAACTTAAGAAAATGAAAAGGATTGCAGAGTTGTTACCTAAATTGCCTCCTCCACTGCCACCACCCCTCTCAGGAAGAAGTTATTTTGACCAAATTTCACTTTTTCGTAAGGAAAAACGAGCAATTGGCTGCCCTTCATTTTTATGGTTCCTTGCATCCTTATCCACCCAGGTGCCATGCTTTATCTTGTGGATGATGAGCATTCGATGGATGTCATTGGATCATCATCCTGGCTTTGATTCTGGTGGTGCTCTGTGGTTTCAAAATTTGACTGAATTTCCAAATGGTGTTTTGGGACCCATCTTTCCAATACTGATTTCTGGTTTGCATTTCATAAATGTTCAGATTTCTTTTAGCACCTCTTCAGTTGGACAAGTACCTGGACTTCTTGGTTTATTAGCCAAATACTACAAATTCTATTTGGAGATTTTGACGGTACCTATATTCTTTACTGGGTTCTATATTCCCCAGGGCAGTTTAGTCTATTGGGTCACCAACAGTTCATTATCTGCCATTCAGCAATTAACTATCAGGCATCCCACTGTTCGTGCAAAGCTGGGATTACCAGATAAGCAAGCTCCAAATGCAGCTGCAAAAGAAATGCATACACCTGGAGAAGGATCATTAGGTCCACCAACAAAGCAGCAATACATTTCTCCAGAAAGTGTATCCCCTCAAGAACTGCCTGGAATCAAATCAATGTATCCTCGAAGGAAGCAGCATCAAATTCCCATTGAAAGCCTGTCCCCTCGAGATCTGATTGCTCTTTCAGTTCAAATTTTATCTAAAGGAGATAAAGATGGAGCAATTCCATTCATACGCATGGCACTTGACAAGGATCCCAATTATGTAAGAGCTTTGGTTGTCATGGGGCAGACTCTATTGCAAAAGGAACAAGTGGAAGAGGCCAGTGATTACTTAGAGCGTGCTGTTACCAAGCTCTTTCTCATCGGCCATCCAACAGAAGATGAGGTTGATCTTATGATTCTTGCATCTCAATGGGCTGGTGCTGCTTGTGTAAGACAGGGAAAAACTGCAGAAGGACTAGTACACCTAGAACGAATAGCAAATTTGAAAGAGCCAGATGAACCAAAGAGCAAAGCCCACTACTTTGACGGGTTGCTATTGCTTGCAAGTACTTTATATCGTGAAGGTCGTAACGCAGAAGCAGCAAAGCATCTGCGCAAGGCAGCTGCTTACAACCCAGCCTACAAGGAGTATTTGGAAGAATGTGAGAGAGAAGACGGCTTTGTGAATGATCTGGTCAGCAGCAGAAGAGGAGATTACTGA 1719 0.4415 MATSEKLLTHLRRRRFREISSLSNSLSFAVPPPISHRSLINPNSHYQLHHHGLFKSRHNLYFPSNLISLAPFSFSHSRSFSSGDSDYVGTDVAVESAIESIPPVRFLVSLLDGYHDVTGWPWWIIIASSTLALRIALFPILVLQLKKMKRIAELLPKLPPPLPPPLSGRSYFDQISLFRKEKRAIGCPSFLWFLASLSTQVPCFILWMMSIRWMSLDHHPGFDSGGALWFQNLTEFPNGVLGPIFPILISGLHFINVQISFSTSSVGQVPGLLGLLAKYYKFYLEILTVPIFFTGFYIPQGSLVYWVTNSSLSAIQQLTIRHPTVRAKLGLPDKQAPNAAAKEMHTPGEGSLGPPTKQQYISPESVSPQELPGIKSMYPRRKQHQIPIESLSPRDLIALSVQILSKGDKDGAIPFIRMALDKDPNYVRALVVMGQTLLQKEQVEEASDYLERAVTKLFLIGHPTEDEVDLMILASQWAGAACVRQGKTAEGLVHLERIANLKEPDEPKSKAHYFDGLLLLASTLYREGRNAEAAKHLRKAAAYNPAYKEYLEECEREDGFVNDLVSSRRGDY* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0977 572 SUPERFAMILY TPR-like 397 549 IPR011990 GO:0005515
Vvi4g0977 572 PANTHER OXA1 94 447 IPR001708 GO:0016020|GO:0032977
Vvi4g0977 572 Gene3D Tetratricopeptide repeat domain 386 556 IPR011990 GO:0005515
Vvi4g0977 572 CDD 5TM_Oxa1-like 119 323 - -
Vvi4g0977 572 MobiDBLite consensus disorder prediction 338 368 - -
Vvi4g0977 572 MobiDBLite consensus disorder prediction 352 366 - -
Vvi4g0977 572 Pfam Tetratricopeptide repeat 428 454 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0977 - - vvi:100247921 1114.37