Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1092 . . . . . . Aed11g0403 . . Aev03g0388 . Ahy13g3876 . Aip03g04311 . . . Amo13g4884 Apr7g1531 Apr3g1498 . . . . . . . . Car02g00784 . Cca06g00602 . . . . Dod04g1131 . . . . Gma02g01023 Gma01g00492 . . Gso2g0939 Gso2g0939 . . . . . Lal23g0814 . . . . . . . . . . . . . . . . . . . . Lja2g1195 . Mal6g1980 . . . . . . . Mtr5g1696 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1549 . . Sto6g2984 Tpr2g2027 . . . Tsu05g02486 . . . . . . . . . . . . .
Vvi1g1093 . . . . . . Aed11g0411 . . . . . . . . . . . Apr7g1537 . . . . . . . . . Car02g00791 . Cca06g00594 . . . . . . . . . Gma02g01030 Gma01g00500 . . Gso2g0946 Gso2g0946 . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g1200 . Mal6g1999 . . . . . . . Mtr5g1703 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1543 . . Sto6g2981 Tpr2g2031 . . . Tsu05g01956 . . . . . . . . . . . . .
Vvi1g1094 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1097 . . . . . . . . . . . . . . . . . . . Apr3g1496 . . . . . . . . Car06g01864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1098 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1099 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car06g01822 Car07g01955 . . . . . . . . . . . . . . . . . . . Lal22g0672 . Lal23g0845 . . . . . . . . . . . Lasa4g01808 . . . . . . . . Lja2g1364 . . . . Mepo5g01941 . . . . . . . . . . . . Psa2g2300 . . . . . . . . . . Pvu3g0481 . . . . . Spst2g01709 . . . . . . . Trre9g02801 . . . . . . . Vimu7g00119 . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lja Lja2g1364 Chr2 13050159 13057618 -
Car Car07g01955 Chr07 22470196 22472939 -
Vvi Vvi1g1091 Chr1 13666015 13666957 +
Vvi Vvi1g1092 Chr1 13673095 13679035 -
Aed Aed11g0403 Chr11 3429926 3436722 -
Aev Aev03g0388 Chr03 2842464 2845774 +
Ahy Ahy13g3876 Chr13 138206568 138212581 -
Aip Aip03g04311 Chr03 127564449 127570193 -
Amo Amo13g4884 Chr13 147773664 147779769 -
Apr Apr7g1531 Chr7 22473164 22479884 -
Apr Apr3g1498 Chr3 29692739 29699885 -
Car Car02g00784 Chr02 11171470 11178922 -
Cca Cca06g00602 Chr06 17346531 17352481 +
Dod Dod04g1131 Chr04 31875818 31881558 -
Gma Gma02g01023 Chr02 11043439 11058054 -
Gma Gma01g00492 Chr01 6827464 6833557 -
Gso Gso2g0939 Chr2 10855752 10862196 -
Gso Gso2g0939 Chr2 10855752 10862196 -
Lal Lal23g0814 Chr23 10629979 10635540 -
Lja Lja2g1195 Chr2 11334947 11340862 -
Mal Mal6g1980 Chr6 42952126 42958101 -
Mtr Mtr5g1696 Chr5 18759550 18765841 -
Ssu Ssu2g1549 Chr2 62784666 62790332 +
Sto Sto6g2984 Chr6 36989684 36995251 +
Tpr Tpr2g2027 Chr2 24337566 24343075 -
Tsu Tsu05g02486 Chr05 33678146 33681570 +
Vvi Vvi1g1093 Chr1 13694392 13717255 +
Aed Aed11g0411 Chr11 3522166 3526477 -
Apr Apr7g1537 Chr7 22533898 22545075 -
Car Car02g00791 Chr02 11342850 11347850 -
Cca Cca06g00594 Chr06 17233620 17240229 +
Gma Gma02g01030 Chr02 11146894 11158520 -
Gma Gma01g00500 Chr01 7083558 7090527 -
Gso Gso2g0946 Chr2 10956630 10959532 -
Gso Gso2g0946 Chr2 10956630 10959532 -
Lja Lja2g1200 Chr2 11397362 11402941 -
Mal Mal6g1999 Chr6 43373486 43378091 -
Mtr Mtr5g1703 Chr5 18835206 18840485 -
Ssu Ssu2g1543 Chr2 62668617 62675094 +
Sto Sto6g2981 Chr6 36944641 36947571 +
Tpr Tpr2g2031 Chr2 24381554 24394699 -
Tsu Tsu05g01956 Chr05 22316271 22320928 -
Vvi Vvi1g1094 Chr1 13733709 13735679 -
Vvi Vvi1g1095 Chr1 13745873 13750949 -
Vvi Vvi1g1096 Chr1 13754427 13755032 -
Vvi Vvi1g1097 Chr1 13783130 13784173 +
Apr Apr3g1496 Chr3 29649917 29652238 -
Car Car06g01864 Chr06 18562146 18563956 +
Vvi Vvi1g1098 Chr1 13804450 13805055 +
Vvi Vvi1g1099 Chr1 13805285 13806679 +
Vvi Vvi1g1100 Chr1 13829611 13833472 +
Car Car06g01822 Chr06 18096743 18101212 -
Car Car07g01955 Chr07 22470196 22472939 -
Lal Lal22g0672 Chr22 4749357 4754086 -
Lal Lal23g0845 Chr23 10850362 10856473 +
Lasa Lasa4g01808 Chr4 363421608 363424691 +
Lja Lja2g1364 Chr2 13050159 13057618 -
Mepo Mepo5g01941 Chr5 21527985 21532361 +
Psa Psa2g2300 Chr2 260396232 260397411 +
Pvu Pvu3g0481 Chr3 5538450 5541467 -
Spst Spst2g01709 Chr2 16037529 16040420 -
Trre Trre9g02801 Chr9 35498101 35502497 +
Vimu Vimu7g00119 Chr7 1516842 1519736 +
Tsu Tsu05g02486 Chr05 33678146 33681570 +