Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1999 ATGAACGCAAAAAATAGCTCGAAATCGAAGAAGTTGGAGATTCCAATTGGAGACGCTATTTCCAGAATTCATTTTTCTCCTAACTCTAATAATCTTCTCATTTCATCTTGGGACACTAATCTTCGTTTATACGACTTTGACGCTTCCGTTCTTAGACTCGAAGCTAATTCAGAAGCTGCTCTTCTTGATTGTTGCTTCTCAGAGGATGATTCTGTTGCTTTCACTGCCGCTTCTGATGGATTCATCCGAAGGTATGACTTGCATTCTGGAATTATTGACCCAATGGGGAGTCACGATGACATGGCAACATGTATTGGATATTCCAATGAAACATGTCTGCTAATTACTTCTGGATTTGACAAGAAGTTATTGTCATGGGATATTCGTACGAAGAAGGCTTTTTCGTTGTCGATGAGTCTAGATGCAGAGATGGACTCCATGTCTGTCTCTGGGTTTAAGGTTACTGTTGGCATTGGAGCATCCGTCCATGTTTATGATTTACGTAACTTTGACAACCCAAAGCTGTCAATGGAGCCTTGCAATGGTACACAATTAAGGTGTGTCAGTTCAATTCCTTATGCAGAAGGATTTGCAGTTGGATCAGTGGATGGACGGGTTGCATTGCAGGTTTCATCTTCATCCAATTCAAATGACATTGGATATACGTTCCGGTGTCATCCAAAATCGAAGGATGGTCAGCATCATTTGGCATCTGTGAACGATATTGCATTCAGTCCACTTGTGTCTGGTCAATTTGTCACTGGAGATGATGAAGGTTATGCTACCATTTGGGATGCTAGAAGTAGGAAAAGACTAATTGAGTTTCCCTGGTACTCAAATAGTGTTGCATCCTTATCTTACAACCATTCGGGACAGATTCTAGCTGTAGCATCAAGTTGTACTTACCAAGAAGCAAAAGAAATAGTAGAGCCTCCTCAAGTGTTTATACATAAAGTGGACAGCATTGATATCGGGTCAAGTTCTGCTCGAAGGAAAACCTAA 1002 0.4092 MNAKNSSKSKKLEIPIGDAISRIHFSPNSNNLLISSWDTNLRLYDFDASVLRLEANSEAALLDCCFSEDDSVAFTAASDGFIRRYDLHSGIIDPMGSHDDMATCIGYSNETCLLITSGFDKKLLSWDIRTKKAFSLSMSLDAEMDSMSVSGFKVTVGIGASVHVYDLRNFDNPKLSMEPCNGTQLRCVSSIPYAEGFAVGSVDGRVALQVSSSSNSNDIGYTFRCHPKSKDGQHHLASVNDIAFSPLVSGQFVTGDDEGYATIWDARSRKRLIEFPWYSNSVASLSYNHSGQILAVASSCTYQEAKEIVEPPQVFIHKVDSIDIGSSSARRKT* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1999 333 SMART WD40_4 46 86 IPR001680 GO:0005515
Mal6g1999 333 SMART WD40_4 216 265 IPR001680 GO:0005515
Mal6g1999 333 SMART WD40_4 88 127 IPR001680 GO:0005515
Mal6g1999 333 SMART WD40_4 7 45 IPR001680 GO:0005515
Mal6g1999 333 SUPERFAMILY WD40 repeat-like 17 299 IPR036322 GO:0005515
Mal6g1999 333 Pfam WD domain, G-beta repeat 20 45 IPR001680 GO:0005515
Mal6g1999 333 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 8 324 - -
Mal6g1999 333 ProSitePatterns Trp-Asp (WD) repeats signature. 114 128 IPR019775 -
Mal6g1999 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 274 IPR001680 GO:0005515
Mal6g1999 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 136 IPR001680 GO:0005515
Mal6g1999 333 Gene3D - 1 329 IPR015943 GO:0005515
Mal6g1999 333 PANTHER MRNA EXPORT FACTOR AND BUB3 8 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1999 Mal-Chr6 43373486 43378091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1999 97 299 Miscellaneous Gene Families AT5G08390 24.155 6.08e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1999 K02180 - gmx:112997601 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1999 6 43373486 43378091 Mal6g1999 6 43373486 43378091 ECH