Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1703 ATGAACACAAAAAATAGCTCATCGAAATCGAAGATACTGTCAATTCCAATCGGTGATGCAATTTCCAGAATTCAATTTGGGCCTAATTCTAACAACCTTCTCATTTCATCTTGGGACACTAATCTTCGTTTGTACGATTTCGACGCTTCTGTGGTTAGATTAGAAGCTAATTCAGAAGCTTCTCTTCTTGATTGTTGTTTCTCTGAGGATGATTCCGTTGCTTTCTCTGTTGCTTCTGATGGATTCATTCGAAGGTATGACTTGCATTCTGGAATTGTTGACCCAATGGGTAGTCACGATGACATGGCAACATGTATTGGATATTCCAATGAAACATGTCTGCTAATTACTTCTGGATTTGACAAGAAGTTATTATCATGGGACATTCGTACAAAGAAAGCTTTTTCGTTGTCGATGAGTCTAGATGCAGAGATTGACTCCATGTCTGTCTCGGGGTTTATGGTTACTGTAGGCATTGGAGCATCTGTCCATGTTTATGATTTACGTAACTTCGACAAACCAAATCTGTCAATGGAGCCTTGCAATGGTACACAATTAAGATGTGTCAGTTCAATTCCGTATGCAGAAGGATTTGCAGTTGGATCAGTGGATGGACGGGTTGCGTTGCAGGTTTCTAATTCATCAAATTCGAATGACATTGGATATACGTTCCGGTGTCATCCAAAATCAAAGGATGGTCAGCATCATTTGGCATCTGTGAACAACATTGCATTTAGTCCACTTATGTCTGGTGCATTTGTCACTGGTGATGATGAAGGTTATGCTACCATATGGGATGCTCGAAGTAGGAAAAGACTAATTGAGTTTCCCAGGTACTCAAATAGTGTTGCATCCTTGTCTTACAACCATTCGGGACAGCTTCTAGCTGTAGCATCAAGTTATACTTTCCAAGAAGCAAAAGAAATTGATTGCATCGCTTGCTCTTTGCTACTTACAGAGTTGAGCCTCCTCAAGTGTTTATACATAAAGTGGACAACATTGATATCGGATCAAGTTCTGCTCGAAGGAAAACTTAAACATTGGTGA 1047 0.3992 MNTKNSSSKSKILSIPIGDAISRIQFGPNSNNLLISSWDTNLRLYDFDASVVRLEANSEASLLDCCFSEDDSVAFSVASDGFIRRYDLHSGIVDPMGSHDDMATCIGYSNETCLLITSGFDKKLLSWDIRTKKAFSLSMSLDAEIDSMSVSGFMVTVGIGASVHVYDLRNFDKPNLSMEPCNGTQLRCVSSIPYAEGFAVGSVDGRVALQVSNSSNSNDIGYTFRCHPKSKDGQHHLASVNNIAFSPLMSGAFVTGDDEGYATIWDARSRKRLIEFPRYSNSVASLSYNHSGQLLAVASSYTFQEAKEIDCIACSLLLTELSLLKCLYIKWTTLISDQVLLEGKLKHW* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1703 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 137 IPR001680 GO:0005515
Mtr5g1703 348 SUPERFAMILY WD40 repeat-like 18 300 IPR036322 GO:0005515
Mtr5g1703 348 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 13 315 - -
Mtr5g1703 348 ProSitePatterns Trp-Asp (WD) repeats signature. 115 129 IPR019775 -
Mtr5g1703 348 SMART WD40_4 269 310 IPR001680 GO:0005515
Mtr5g1703 348 SMART WD40_4 217 266 IPR001680 GO:0005515
Mtr5g1703 348 SMART WD40_4 48 87 IPR001680 GO:0005515
Mtr5g1703 348 SMART WD40_4 8 46 IPR001680 GO:0005515
Mtr5g1703 348 SMART WD40_4 89 128 IPR001680 GO:0005515
Mtr5g1703 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 275 IPR001680 GO:0005515
Mtr5g1703 348 Gene3D - 1 311 IPR015943 GO:0005515
Mtr5g1703 348 PANTHER MRNA EXPORT FACTOR AND BUB3 13 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1703 Mtr-Chr5 18835206 18840485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1703 98 327 Miscellaneous Gene Families AT5G08390 24.051 9.52e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1703 K02180 - gmx:100798072 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1703 5 18835206 18840485 Mtr5g1703 5 18835206 18840485 ECH