Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00594 ATGAATGGAGATTGGATGGAATTGGATTTAGCATTTGGCGACGCCATTTCTGAACTCCAATTCGCGCCTCACTCTAACAACAACCTCCTCATCTCTTCTTGGGACTCCAATCTTCGCCTCTACGACGTCGACGCCTCCATCCTCAGACTCCAAGCTCCTTCCCAAGCTCCTCTTCTCGCTTCCTGCTTCCCAGACCACGCCCTTGCCTTCACCGCCGCCTCCGACGGATTCATCCGAAGGTATGACTTGCATTCTGGACATGTTGATACAGTGGGTAGTCACGATGATATAGCAACGTGTGTTGGATATTCCAATCAAACATGTCAGTTGATCACATCTGGATTTGACAAGAAGTTAATTTCGTGGGACATGCATACGGAGAAGGCTTCTTCGTGTTTGAGAAGTCTAGATGCAGAGGTGGACTCCATGTATGTCTCTGGGTTTAATCTTACTGTAGCCATTGGAGCATCAGTGCATGTTTATGATTTACGTAACTTTGACAAACCAGTTCAATCAAAAGAGGCATTGAATGGACCACACTTGAGCTGTGTTAGTTCAATTCCAGATGCAGAAGGATTCGCAGTTGGGTCTGTAGATGGACGAGTATCACTGCAGATTTCCTATCCATCCAGTTCAAATGACATTAGATATATATTCCGGTGTCATCCAAAATCAAAGGATGGACGGCATTATTTGGTATCAGTGAATGACATTGCATTCAGTCCACTTGTATCTGGTGCTTTTGCCACCGGTGACAATGAAGGTTATGTTACCATATGGGATGCTGGAAGTAGGAAAAGACTAGTTGAGTTTCCCAGACACCCAAATAGTGTTGCATCCTTATCATACAACCACGAGGGACAGCTTCTGGCTGTAGCGTCAAGCCATTCTTACCAAGAAGCAAATGAAATAGAAAAACCACCTCGTCTATTCATCCATAAAGTGGACAACATTGATATTGGATCAATCTCTGCTAGCAGGAATAGTTAA 990 0.4444 MNGDWMELDLAFGDAISELQFAPHSNNNLLISSWDSNLRLYDVDASILRLQAPSQAPLLASCFPDHALAFTAASDGFIRRYDLHSGHVDTVGSHDDIATCVGYSNQTCQLITSGFDKKLISWDMHTEKASSCLRSLDAEVDSMYVSGFNLTVAIGASVHVYDLRNFDKPVQSKEALNGPHLSCVSSIPDAEGFAVGSVDGRVSLQISYPSSSNDIRYIFRCHPKSKDGRHYLVSVNDIAFSPLVSGAFATGDNEGYVTIWDAGSRKRLVEFPRHPNSVASLSYNHEGQLLAVASSHSYQEANEIEKPPRLFIHKVDNIDIGSISASRNS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00594 329 SUPERFAMILY WD40 repeat-like 13 295 IPR036322 GO:0005515
Cca06g00594 329 PANTHER MRNA EXPORT FACTOR AND BUB3 1 320 - -
Cca06g00594 329 SMART WD40_4 212 261 IPR001680 GO:0005515
Cca06g00594 329 SMART WD40_4 84 123 IPR001680 GO:0005515
Cca06g00594 329 SMART WD40_4 1 42 IPR001680 GO:0005515
Cca06g00594 329 SMART WD40_4 264 302 IPR001680 GO:0005515
Cca06g00594 329 SMART WD40_4 43 82 IPR001680 GO:0005515
Cca06g00594 329 ProSitePatterns Trp-Asp (WD) repeats signature. 110 124 IPR019775 -
Cca06g00594 329 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 132 IPR001680 GO:0005515
Cca06g00594 329 Gene3D - 6 322 IPR015943 GO:0005515
Cca06g00594 329 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 1 320 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00594 K02180 - gmx:112997601 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00594 06 17233620 17240229 Cca06g00594 06 17233620 17240229 ECH