Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1200 ATGAAGTTGGAGATCGGAATCGGCGACGCCATATCCAGAATCCGATTCGCGCCGCACTCCAACAACCTCCTCATTTCGTCTTGGGACTCCAATCTTCGGCTTTACGACGTTGACGCCTCCGTGCTCAGACTGGAAGCTTCTTCAGAAGCTGCCCTTCTCGATTGCTGCTTCCAATACGACTCCACTGCTTTCACTGCTGCTTCTGATGGATGCATTCGAAGGTATGACTTGCATTCAGGAACTATGGACATCATCGGCAGTCACGACGATATGGCGACGTGTATTGAATATTCCGATGAAACATTTCAGTTGATCACATCCGGATTTGACAAGAAGTTATTGTCGTGGGATATGCGTATGGAGAAGGCTTTTTCTCGCTCAATAAGTTTAGATGCAGAGGTGGATTCCATGTCTGTCTCTGGGTTTAATCTAATTGTAGGCATTGGAGTATCGGTGCAGGTTTATGATCTACGTAACTTTGACAAACCAGTTCAGTCAAAGGAGCCATACAAGGGCACACAGTTAAGATGTGTCACTTCTATTCCTTATGCAAAAGGATTTGCGGTAGGATCAGTAGATGGACGAGTATCATTACAGATTTCCTCTTCATCCAGTTCAAATGACATTGGGTATACATTCTGGTGTCATCCAAAATCAAAGGATAGACGGCATCATTTGGTATCAGTGAATGACATTGTATTCAGTCCACTTGTGTCTGGAACTTTTGTCACCGGTGACAATGAAGGTTATGCTTCCATATGGGATGCTAGAAGTAGGAGAAGACTAGTTGAGTTGCCAAGATATCCAAATAGTGTTGCATCCTTATCGTACAACCACGTGGGACAGCTTCTAGCTGTAGCGTCAAGCTATACTTACCAAGAAGCAAACGAAATAGAAGAGCCTCCTCAAGTATTCATTCATGAAGTGGACAACATTGATATCGGATCAAGTTCTGCTGGTAGGAGTAGTTAG 972 0.4414 MKLEIGIGDAISRIRFAPHSNNLLISSWDSNLRLYDVDASVLRLEASSEAALLDCCFQYDSTAFTAASDGCIRRYDLHSGTMDIIGSHDDMATCIEYSDETFQLITSGFDKKLLSWDMRMEKAFSRSISLDAEVDSMSVSGFNLIVGIGVSVQVYDLRNFDKPVQSKEPYKGTQLRCVTSIPYAKGFAVGSVDGRVSLQISSSSSSNDIGYTFWCHPKSKDRRHHLVSVNDIVFSPLVSGTFVTGDNEGYASIWDARSRRRLVELPRYPNSVASLSYNHVGQLLAVASSYTYQEANEIEEPPQVFIHEVDNIDIGSSSAGRSS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1200 323 ProSitePatterns Trp-Asp (WD) repeats signature. 104 118 IPR019775 -
Lja2g1200 323 SMART WD40_4 206 255 IPR001680 GO:0005515
Lja2g1200 323 SMART WD40_4 1 36 IPR001680 GO:0005515
Lja2g1200 323 SMART WD40_4 38 76 IPR001680 GO:0005515
Lja2g1200 323 SMART WD40_4 78 117 IPR001680 GO:0005515
Lja2g1200 323 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 2 314 - -
Lja2g1200 323 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 264 IPR001680 GO:0005515
Lja2g1200 323 PANTHER MRNA EXPORT FACTOR AND BUB3 2 314 - -
Lja2g1200 323 SUPERFAMILY WD40 repeat-like 6 289 IPR036322 GO:0005515
Lja2g1200 323 Gene3D - 1 318 IPR015943 GO:0005515
Lja2g1200 323 ProSiteProfiles Trp-Asp (WD) repeats profile. 85 126 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1200 Lja-Chr2 11397362 11402941 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1200 K02180 - gmx:100798072 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1200 2 11397362 11402941 Lja2g1200 2 11397362 11402941 ECH