Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1543 ATGAAGGGAGATTGGTTGGGTTTGGAGTTGGAGTTGGAGAAGGGAATAGGGGACGCCATTTCTCGAACCCGATTCGCGCCTCACTCTAACAACCTCCTCATCTCTTCTTGGGACTCTAGTCTTCGCCTCTACGACGTTGACGCCTCCCTCCTCAGACTCCAAGCTCCTTCGCAAGCTCCCCTTCTCGACTGCTGCTTCCAGAACGACGTCGTTGCTTTCACCGCCGCCTCTGATGGATTAATCCGAAGGTATGACTTGCATTCAGGACTTGTTGACACAGTGGGTAGTCACGATGATATAGCAACGTGTATCGGATATTCCAATGAAACATCTCAGTTGATCACATCTGGATTTGACAAGAAGTTATTGATGTGGGACCTGCATATGGAAAACGCTTCTTCGTGTTTGAGAAGTCTAGATGCAGAGGTGGACTCCATGTCTGTCTCTGGGTTCAATCTTACTGTAGCTATTGGAACATCAGTACATGTTTATGATTTACGATGCTTTGACAAACCAGTTCAGTCAAAGGAAGCATTCAATGGAGCATACATACGATGTGTCAGTTCAATTCCAGATGCGGAAGGACTTGCAGTTGGGTCTATAGATGGACGAGTATCACTGCAGATTTCCTATCCATCCAATTCAAATGACATTAGATATATATTCCGATGTCATCCAAAATCAAAGGATGGACGGCATTATTTGGTATCAGTGAATGACATTGCATTCAGTCCACTTGTATCTGGTGCTTTTGTCACTGGTGACAATGAAGGTTATGTTACCATATGGGATGCTGGAAGTAGGAGAAGACTAGTTGAGTTGCCCAGATACCCAAATAGTGTTGCATCCTTATCATACAACCACGTGGGACAGCTTCTGGCTGTAGCATCAAGCTATACTTACCAAGAAGCAAATGAAATAGAAAAACCACCTCGTATATTCATCCATAAAGTGGACAGTATTGATATTGGATCAATTTCTGCTAGTAGGAAAAGTTAA 999 0.4384 MKGDWLGLELELEKGIGDAISRTRFAPHSNNLLISSWDSSLRLYDVDASLLRLQAPSQAPLLDCCFQNDVVAFTAASDGLIRRYDLHSGLVDTVGSHDDIATCIGYSNETSQLITSGFDKKLLMWDLHMENASSCLRSLDAEVDSMSVSGFNLTVAIGTSVHVYDLRCFDKPVQSKEAFNGAYIRCVSSIPDAEGLAVGSIDGRVSLQISYPSNSNDIRYIFRCHPKSKDGRHYLVSVNDIAFSPLVSGAFVTGDNEGYVTIWDAGSRRRLVELPRYPNSVASLSYNHVGQLLAVASSYTYQEANEIEKPPRIFIHKVDSIDIGSISASRKS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1543 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 127 IPR001680 GO:0005515
Ssu2g1543 332 Pfam WD domain, G-beta repeat 93 126 IPR001680 GO:0005515
Ssu2g1543 332 ProSitePatterns Trp-Asp (WD) repeats signature. 113 127 IPR019775 -
Ssu2g1543 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 127 - -
Ssu2g1543 332 SUPERFAMILY WD40 repeat-like 14 298 IPR036322 GO:0005515
Ssu2g1543 332 SMART WD40_4 215 264 IPR001680 GO:0005515
Ssu2g1543 332 SMART WD40_4 87 126 IPR001680 GO:0005515
Ssu2g1543 332 SMART WD40_4 3 45 IPR001680 GO:0005515
Ssu2g1543 332 SMART WD40_4 169 209 IPR001680 GO:0005515
Ssu2g1543 332 SMART WD40_4 47 85 IPR001680 GO:0005515
Ssu2g1543 332 PANTHER MRNA EXPORT FACTOR AND BUB3 9 323 - -
Ssu2g1543 332 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 9 323 - -
Ssu2g1543 332 Gene3D - 8 326 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1543 Ssu-Chr2 62668617 62675094 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1543 K02180 - gmx:100798072 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1543 2 62668617 62675094 Ssu2g1543 2 62668617 62675094 ECH