Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1093 ATGGAGGGAAGTTGTTTGCAATTCCAAAACCCAATCCGTGATGCCATCTCTAGAATCAGATTCGCCCCACAATCTAATAACCTTCTCATCTCCTCTTGGGACTGCAGTCTTCGATTATATGACGTGGATGGCTGGGTGCTTAGATTAGAAGCTCCCACGGACTCTGCGCTGCTTGATTGTTGTTTCCAGAATGGGTCCATAGCCTTTAGTGCTGGTTCTGATTGTTATGTTAGAAGGTATGACTTACATTCAGGAATTCAAGATACAATAGGGAATCATGATGATCTGGCTACCTGTGTTGAATATTGTGATGAAACATGTCAAGTGGTTTCTGCAGGTTGGGATAACAAGATAATGTTGTGGGACACGCGTATGAAAAAGGCTCCTGGATGTGTCAAAATTCTGGGCGCTGAGGTGGAGTCCATGTCATTATCCGTATTTAATTTGCTGGTTTCTGCTGGAGCCTCAGTAAATACTTATGACTTGCGTATGTTAGAGAGATCTGCCCAGGCAGAACAATTATTAATGGGCGTTCAAATAAAATGTCTCAGATCAATTCCTAACTCTAAAGGGTTTGCAGTTGGATCTATTGATGGACGGGTGACATTGCAGATTCCTGATCCATCCAATTCAAATGACACTGGATATAGTTTTCGCTGTCATCCGAAGTCAAAGAAGGGAAGAGATCATCTTGTAGCAGTGAATGATATTGTATTCAACCCAATCATCTGTAGTGCTTTTGTCACATGCGATGATGAGGGCTATGTTTGTTCATGGGATGCTCAAAGTAGGAGAAGACTATTTGAGTTGTCCAAAAACCCTAATAGTGTGGTGTCCTCATCATATAACCACAGTGGACAATTGTTAGCTGTTGCATCAAGCTGCACATACCAAGAAGGGAATGAAAAAGAAGAGTCTCCTCGAATACTCGTACATGTAATGGATGACAACAATGGATTGGTTTCTTCTGGAACTTCCAGATAA 984 0.4187 MEGSCLQFQNPIRDAISRIRFAPQSNNLLISSWDCSLRLYDVDGWVLRLEAPTDSALLDCCFQNGSIAFSAGSDCYVRRYDLHSGIQDTIGNHDDLATCVEYCDETCQVVSAGWDNKIMLWDTRMKKAPGCVKILGAEVESMSLSVFNLLVSAGASVNTYDLRMLERSAQAEQLLMGVQIKCLRSIPNSKGFAVGSIDGRVTLQIPDPSNSNDTGYSFRCHPKSKKGRDHLVAVNDIVFNPIICSAFVTCDDEGYVCSWDAQSRRRLFELSKNPNSVVSSSYNHSGQLLAVASSCTYQEGNEKEESPRILVHVMDDNNGLVSSGTSR* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1093 327 SUPERFAMILY WD40 repeat-like 7 294 IPR036322 GO:0005515
Vvi1g1093 327 PANTHER MRNA EXPORT FACTOR AND BUB3 2 314 - -
Vvi1g1093 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 90 124 IPR001680 GO:0005515
Vvi1g1093 327 ProSitePatterns Trp-Asp (WD) repeats signature. 109 123 IPR019775 -
Vvi1g1093 327 Gene3D - 2 319 IPR015943 GO:0005515
Vvi1g1093 327 SMART WD40_4 2 41 IPR001680 GO:0005515
Vvi1g1093 327 SMART WD40_4 211 260 IPR001680 GO:0005515
Vvi1g1093 327 SMART WD40_4 42 81 IPR001680 GO:0005515
Vvi1g1093 327 SMART WD40_4 83 122 IPR001680 GO:0005515
Vvi1g1093 327 FunFam Mitotic checkpoint protein BUB3.3 4 319 - -
Vvi1g1093 327 Pfam WD domain, G-beta repeat 91 122 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1093 Vvi-Chr1 13694392 13717255 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1093 K02180 - vvi:100254024 669.848