Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1095 ATGTCCTACTTTCTGGGTATGGAGGTGAAGCAAGATCATGATGGAAGCAATGCAATGAATAAAAATACACTTCCAGATACCAAGTTTTTCTTTACTGGAAAAATTTGTTTTTCCTTTGCTGTCATAAATTTCTGCCCTGTTCTTGTGCCATATATCAACATATTTCAATTTGTGGAAGGGGCTTTTGTGACTGCACTTCGAAATGGTGACTGGATTTTGCTTGATGAGGTGAATTTAGCTCCCCCAGAGGAAAGATATCTCCACAAATACCTTTTTGATGAATACTTGATGGCTAGGGGAAACACAAGCTCTGGTGATTTCTTGGAGAACTATATTCTAATCAGGAACCTAGCTCGTGCTGTTTTGATTAAACGATATCCTGTTCTCTTACAGGGTCCCACCTCAAGTGGAAAGACGAGTCTTGTGCAGTATCTTGCTGCAATAACCAGCCATGAATTTGTATGGATCAATAATCATGAACACACAGACGTTCAAGAATACTTAGGTTCCTATGTGACTGATGCTAGTGGGAAGCTAGTCTTTCATGAAGGTGTATTGGTTAAGGGTGTCTGGAATGGATATTTGATAGTTCTGGATAAGCTTAACTTGGCCTCATCTGATATGCTGGAAGCCTTGAACCAATTGTTGGATGACAACAGAGAGCTTTTTGTGCCTGAATTACGAGAAACAATGCCAGCACAACTAGATTTTATGCCTTTTTCTACTCTAAATCCCCCTACTCTCTATGGAGGACATAAAATGCTTTCTCGAGCATTTCGTAACCGTTTTGTGGAGAGTCATGTTGATGAGATCCCAGAAGATGAGTTGAGCACGATATTAAACAATTGGTGCAAAATCTCTGAAAGTTATGTGAAGATAATGGTTGAAGTTATGAAGGAGTTGAAGTTGCATCGACAGAGTAGTGAAGTGTTTGCTGGAAAACATGGATTCATAACTCTTATAGACTTATTTTGGTGGGCTGATCATTTCAGGACATTTGGGAATTCAAATGAAGATTTGGCCAGAGATGGTTATTATCTTTTGGCAGAAACATTCAAAGATGAGGGCGAGAAAAAGGTTGTTCAAGCAGTTTTAGCGAAACATCTCCAGGTTAAACTACTCAAAGATAACTTGTACCATCAGAAATGGCAGACCCTTTTTATGTGGCAAGATGGACCTCTTGTACAAGCAATGAAGGATGGTGATATGTTTCTTGTTGATGAAATCTCCTTGGCTGATGATAGCGTACTTGAACAATTGAATAATGTCTTGGAGCCAGAAAGGAAACTGGCGGGGCCTGCTGCTTTTTTCCCCATCCACTATCACTACTCTTGCTATCGGTACCATTACTTATGA 1356 0.3975 MSYFLGMEVKQDHDGSNAMNKNTLPDTKFFFTGKICFSFAVINFCPVLVPYINIFQFVEGAFVTALRNGDWILLDEVNLAPPEERYLHKYLFDEYLMARGNTSSGDFLENYILIRNLARAVLIKRYPVLLQGPTSSGKTSLVQYLAAITSHEFVWINNHEHTDVQEYLGSYVTDASGKLVFHEGVLVKGVWNGYLIVLDKLNLASSDMLEALNQLLDDNRELFVPELRETMPAQLDFMPFSTLNPPTLYGGHKMLSRAFRNRFVESHVDEIPEDELSTILNNWCKISESYVKIMVEVMKELKLHRQSSEVFAGKHGFITLIDLFWWADHFRTFGNSNEDLARDGYYLLAETFKDEGEKKVVQAVLAKHLQVKLLKDNLYHQKWQTLFMWQDGPLVQAMKDGDMFLVDEISLADDSVLEQLNNVLEPERKLAGPAAFFPIHYHYSCYRYHYL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1095 451 Gene3D - 112 281 IPR027417 -
Vvi1g1095 451 Pfam AAA domain (dynein-related subfamily) 127 263 IPR011704 GO:0005524|GO:0016887
Vvi1g1095 451 Pfam AAA domain (dynein-related subfamily) 387 428 IPR011704 GO:0005524|GO:0016887
Vvi1g1095 451 FunFam Midasin 111 280 - -
Vvi1g1095 451 Pfam Midasin AAA lid domain 275 371 IPR040848 -
Vvi1g1095 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 298 IPR027417 -
Vvi1g1095 451 PANTHER MIDASIN-RELATED 380 430 - -
Vvi1g1095 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 428 IPR027417 -
Vvi1g1095 451 Gene3D - 338 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1095 Vvi-Chr1 13745873 13750949 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1095 K14572 - vvi:100244657 485.723