Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00831 ATGATCTCAATTTTCAGGAACATGCCTTTCAAGAACCATTTACCAGTGTTCATCATGATGGTTCTTTCTTTCATTTCTAATGTTCAAGCACAATACAGTGACGCAGATACCATGCAAGATTTCCCTCAACCAGTTCGTCCAAGCAAGATGGTTGTAATAGTGGCCCTCTCAATATTGTTCACTTTATCATTCATCTTACTTGTCTATATAAGGTTCTGCAGAACCACCCCTCTTGAGCTTATCAACAGAAGGAACCATCATTCACCCAATTTTCAAGCACTAACTCGGTCAAGATCAAGGAATTCAGGGATAGACAAAAAAGTGATTGAAGCACTCCCATTTTTCATGTTCTCTTCCCTTAAGGGGTCCAAACAAGGCCTAGATTGCACAGTTTGCTTGTCACAGTTTGAGGACACCGAGATTCTTAGACTCTTGCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGTCACTCTACATGCCCTCTTTGCAGGAATAATATTCACCCCTTAGACATCAAGAACTTCAACTACTCAATCAGTTCAAGGTCCCTAAGAGTTCCTTCAAATTTAACCGAGGACACTAACCTTGAAATCTTTGTTCACAGGGAACCTTCCCATCAAGGGTCATCATCATCAAGGTTTAACATCGGAAGCAGGTTTTGGAATTTGGGCAGCAGCAACAGAAAAAAGCTTCTCGTTGACCAAGAGGTTTATGGTACAAATGGGACACACGTGCACAAGTTCTATCACAAAATTGTTGTCTCTGATGTTGTTAGAAGAAGCAGGTGGAGTGATCTTAACTCTTCGGACATGTTATCATTGAATAGTGAGATGATTCACCACGTTTCAACAGGAAGATTCTCTCCCTCTAATGAACTTTTTTGCGGAAATTCGAGCCTTTCCTCTATTTTCAATGCGGATGAAAGTTCATTTACATTATTGAATACAGCTGAGAAGAGATCTATGTCTGATATTTCTCATGTTCCAAGGTTCATAGAAACATGTGAGCAGAATAGAATGGAACCAGGTGAGGCATCAAGTGGGAATAACGAGAGGGAAGAGAGGATGAGGAGCGTTTGGTTGGCAATTGCTCAGCGAACAGTGCAATGGTTTGCAGGAGAAGAAAGAAACTCAACAGACTTAGAGCTAAAACATTTAGCTCCGAATGTTTGA 1194 0.407 MISIFRNMPFKNHLPVFIMMVLSFISNVQAQYSDADTMQDFPQPVRPSKMVVIVALSILFTLSFILLVYIRFCRTTPLELINRRNHHSPNFQALTRSRSRNSGIDKKVIEALPFFMFSSLKGSKQGLDCTVCLSQFEDTEILRLLPKCKHAFHMNCIDKWFESHSTCPLCRNNIHPLDIKNFNYSISSRSLRVPSNLTEDTNLEIFVHREPSHQGSSSSRFNIGSRFWNLGSSNRKKLLVDQEVYGTNGTHVHKFYHKIVVSDVVRRSRWSDLNSSDMLSLNSEMIHHVSTGRFSPSNELFCGNSSLSSIFNADESSFTLLNTAEKRSMSDISHVPRFIETCEQNRMEPGEASSGNNEREERMRSVWLAIAQRTVQWFAGEERNSTDLELKHLAPNV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00831 397 CDD RING-H2_EL5-like 128 171 - -
Phco2g00831 397 FunFam RING-H2 finger protein ATL43 104 178 - -
Phco2g00831 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Phco2g00831 397 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Phco2g00831 397 SUPERFAMILY RING/U-box 124 177 - -
Phco2g00831 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 383 - -
Phco2g00831 397 Pfam Ring finger domain 128 171 IPR001841 -
Phco2g00831 397 SMART ring_2 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00831 Phco-Chr2 9586420 9587613 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00925 7 7445317 7447069 Phco2g00831 2 9586420 9587613 PCT