Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1153 ATGAGGGGACCGTCTCCGAACTTCGTGGAGCCGCGCCATCGCTCCTCCGCCTCCTTTAGTGAAGATACCGGCAAGAGAAGGTCTCAAAGAAGTAAAGATTTCAAAGATGTTGAGAAGTTGTTGCATACACCGTTCCAAGAGAGGAGTATAACATGCAGGCCAAATTGGAAATTAGTTTTGGTTATTGTTATATTGGGAACCTTGGTTACCTTTTTCCATCCTCCAGCTGTTTACAATACCGATCATTTGTCAAACTCTATTATGTCGCGGCCAACTTTTATAAACAGCTGGAGAGGAGGATTTGGAGGAATTGATTCACGCTATGCATCATTTCTCAATATTGAGTGGAACCAAATATCTAATGTTCTCGAAAATTTGAAGGATAAGGACACATATCAGGGTGTTGGCTTATTAAACTTCAATGACAGTGAGAATGACCACTGGAAGGAGCTGATACCAGAAGCAGAGCATGTAGTCCTTAGTCTGGACTATGTTTCAAGTAATATTACTTGGGAAGTTCTGTATCCCGAATGGATAGATGAAGAAGAAGAATATGAGTTCCCTACTTGTCCAGCTCTACCTAGGATTCAGGTACCAGGAAAGCCCCGGCTTGATCTTATTGCTGTCAAGCTTCCCTGCCACAAGTCGGGACGCTGGTCAAGAGATGTAGCTCGTTTGCACTTGCAAATTGAAGCTGCAAGACTTGCTGCCTCTTCCAAAGGATATCATCCAGTGCGTGTCCTTTTGGTCACGGATTGCTTCCCGATTCCAAATCTATTTACTTGCAAGGACCTTATACAGCGTGAAGGGAGTGCCTGGCTTTATGAACCCAACCTGAATAGACTGAGGGATAAGCTGCAGCTACCAATTGGTTCATGTGAACTAGCAGTTCCTATGAAGGCTAAAGAAAATTTCTATTCAGAAAGGCCACACCGAGAAGCTTATGCAACCATCCTGCACTCTGCACACTTGTATGTTTGTGGAGCTATTACTGCTGCTCAGAGTATTCGAATGGCTGGTTCTACACGAGATCTTGTGATTCTTGTTGACGACACGATTACTGACTATCATAGAGGTGGCTTGGAGGCTGCTGGATGGAAGATTCACACAATCCAAAGAATCAGGAATCCAAAAGCAGAACCAGAGGCATACAACGAGTGGAACTACAGCAAATTCCGTCTCTGGCAGCTAACAGATTATGATAAAATCATTTTCATTGATGCTGACCTTCTAATTCTTAGAAATATCGATTTCCTTTTTGAGATGCCTGAAATAACTGCCATAGGAAACAATGCTACGCTGTTCAACTCGGGTGTAATGGTGGTTGAACCATCAAATTGTACATTCCAACTGCTTATGGATCACATCAATGAGATTGTCTCCTACAATGGAGGGGACCAGGGGTATCTTAATGAAATCTTCACATGGTGGCACCGGATTCCAAAACATATGAACTTCTTGAAGCACTTCTGGGAAGGTGATGAGGAAGAGAAAAAAGTGATGAAAACCCGTCTCTTCGGAGCCGATCCACCAATCCTTTATGTCATCCATTATCTGGGTTATAAACCATGGCTTTGCTTTCGAGACTATGACTGCAACTGGAATGTGGACATTCTGCAGGAGTTTGCAAGTGATGTGGCTCATGCAAGATGGTGGAAGGTGCATGATGCAATGCCACAAAACTTGCATAAGTACTGTCTGCTTAGGTCCAAGCAGAAGGCTTCATTAGAGTGGGATCGTAGACAAGCAGAAAAGGGAAACTACAGTGATGGTCACTGGAAAATCAAGATAGAGGATCCAAGATTGAAAACGTGCTTTGAGGATTTCTGTTTTTGGGAGAGCATGTTATGGCATTGGGGTGAAAAGAATTGGACAGATAATTCCACTGTTAACAATTCGTCACCTGTTGTCCAAATCAAATCTCTCTCGTCTTTTTGA 1938 0.4314 MRGPSPNFVEPRHRSSASFSEDTGKRRSQRSKDFKDVEKLLHTPFQERSITCRPNWKLVLVIVILGTLVTFFHPPAVYNTDHLSNSIMSRPTFINSWRGGFGGIDSRYASFLNIEWNQISNVLENLKDKDTYQGVGLLNFNDSENDHWKELIPEAEHVVLSLDYVSSNITWEVLYPEWIDEEEEYEFPTCPALPRIQVPGKPRLDLIAVKLPCHKSGRWSRDVARLHLQIEAARLAASSKGYHPVRVLLVTDCFPIPNLFTCKDLIQREGSAWLYEPNLNRLRDKLQLPIGSCELAVPMKAKENFYSERPHREAYATILHSAHLYVCGAITAAQSIRMAGSTRDLVILVDDTITDYHRGGLEAAGWKIHTIQRIRNPKAEPEAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITAIGNNATLFNSGVMVVEPSNCTFQLLMDHINEIVSYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKVMKTRLFGADPPILYVIHYLGYKPWLCFRDYDCNWNVDILQEFASDVAHARWWKVHDAMPQNLHKYCLLRSKQKASLEWDRRQAEKGNYSDGHWKIKIEDPRLKTCFEDFCFWESMLWHWGEKNWTDNSTVNNSSPVVQIKSLSSF* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1153 645 Pfam Glycosyl transferase family 8 319 525 IPR002495 GO:0016757
Vra6g1153 645 PANTHER GLYCOGENIN SUBFAMILY MEMBER 14 626 - -
Vra6g1153 645 CDD GT8_Glycogenin 313 558 - -
Vra6g1153 645 MobiDBLite consensus disorder prediction 1 32 - -
Vra6g1153 645 SUPERFAMILY Nucleotide-diphospho-sugar transferases 313 564 IPR029044 -
Vra6g1153 645 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 311 561 IPR029044 -
Vra6g1153 645 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 3-RELATED 14 626 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
Vra6g1153 645 MobiDBLite consensus disorder prediction 15 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1153 Vra-Chr6 18672072 18675475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1153 4 621 Glycosyltransferase AT1G77130 68.320 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1153 K20890 - gmx:100787339 1233.78