Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0888 ATGGTGAAGACCACACCATCGAGAGCTTTAGTCATCAGAATCAATCTGGTTTTCCTCGCCTTCTTTCTGATCGCCTACGCAACCTTTCTTCTCCGGCCATCGTCTTCAATCTACTTCGAGAATGCCGCCTCCGTCGTGAGATGCTCCTTGCGTGAATGCCATCATAAGGCAGAAAACAGCATGAAAATGAAAGCGGTGTTGCAGCAGCCTCAGGAAAATTCACGGAGGCCGAAGGGTATTGCGAGTAAGGTAGAGATGCCAAGCTTCGTTCGAGAAATGGGGAGAGGGATGAAGCTAGGAATGGTGAACTTGGAAGAAGATGATGTGGAGGAGTGGAGATCAAAGGGAGAAGTGATAAATGTTGAATTCGACAGGGTATCAAAGATGTTCAACTGGACAGATTTGTTCCCAGAGTGGATCGATGAGGAAGAAGAGAGCGATGTTCCGTCGTGCCCGGAGATACCGATGCCGGAGTTTGAAGCATACGAGAACATGGACGTGATCGTGGCTAAATTGCCATGCAAGTATCCAGAGGAGGGGTGGGCGAGGGACGTGTTTCGGCTACAAGTTCATCTGATAGCGGCGAATCTGGCGGTGAAGAAAGGGAAGAAGGACTGGGATTGGAAGACGAAGGTGGCGTTCTGGAGCAAGAGTAGGCCAATGATGGAGCTGTTTCGATGTGACGATTTGGTGACGCAGGAAGGTGACTGGTGGTATTATGAAACAGAGGTGAAGAAGCTGGAGAACAAGATGTCATTGCCTGTTGGTTCCTGTAAGTTGGCCCTGCCCCTGTGGGAACAAGGAATTGATCAAGTGTATGACTTATCAAAGATTCGGAAAAGTGTAGCAAGCGGAACAAGAGTGAAACGCGAAGCCTACGCCACTCTGCTGCACTCTTCTGAATCTTATGTTTGTGGAGCAATAACGTTAGCACAGAGCCTCCTTCAAACCGGAACCAAACGCGACCTTATCCTCCTCATAGACAAATCTATCTCCGCTCCCAAACGACAGTCCCTCGCCGATGCGGGTTGGAAGATCCGAATCATCACCCGGATTAGGAATCCCAGAGCCGAGAATGGCACTTACAACGAGTACAACTACAGCAAGTTCCGCCTCTGGCAGCTTACCGACTACGACAAGGTCATCTTCATCGACTCCGATATCATCGTTCTACGCAACCTCGATATCCTCTTCTATTTCCCCCAAATGTCCGCCACCGGCAACGACCAATCCATCTTCAACTCCGGCATAATGGTCATCGAACCTTCCAATTGTACCTTCCGTGTGTTGATGGATCGCCGGGACGACATCATTTCTTACAACGGAGGAGACCAGGGGTTCCTGAACGAGATCTTCGTGTGGGATTATGACTGTAACTGGGATGTGGAGGATCAAAGAGTGTATGCAAGCGATGTGGCTCACGGGAGGTGGTGGAGGCTCTACGATGAAATGGATGAGAGGTTGCAGAGTTTCTGTAGATTGACGAGACGACGTCGGACGGAATTGAATTGGGAAAGGAGGAAAGCCGGAAAGAAGGGATTGCCAGATGGACACTGGAAAATCAATATTACAGATCCCAGACGAGCTGGCTCTCTTTTGATGGATTAG 1608 0.495 MVKTTPSRALVIRINLVFLAFFLIAYATFLLRPSSSIYFENAASVVRCSLRECHHKAENSMKMKAVLQQPQENSRRPKGIASKVEMPSFVREMGRGMKLGMVNLEEDDVEEWRSKGEVINVEFDRVSKMFNWTDLFPEWIDEEEESDVPSCPEIPMPEFEAYENMDVIVAKLPCKYPEEGWARDVFRLQVHLIAANLAVKKGKKDWDWKTKVAFWSKSRPMMELFRCDDLVTQEGDWWYYETEVKKLENKMSLPVGSCKLALPLWEQGIDQVYDLSKIRKSVASGTRVKREAYATLLHSSESYVCGAITLAQSLLQTGTKRDLILLIDKSISAPKRQSLADAGWKIRIITRIRNPRAENGTYNEYNYSKFRLWQLTDYDKVIFIDSDIIVLRNLDILFYFPQMSATGNDQSIFNSGIMVIEPSNCTFRVLMDRRDDIISYNGGDQGFLNEIFVWDYDCNWDVEDQRVYASDVAHGRWWRLYDEMDERLQSFCRLTRRRRTELNWERRKAGKKGLPDGHWKINITDPRRAGSLLMD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0888 535 PANTHER GLYCOGENIN SUBFAMILY MEMBER 454 529 - -
Lele28g0888 535 CDD GT8_Glycogenin 291 484 - -
Lele28g0888 535 Pfam Glycosyl transferase family 8 297 398 IPR002495 GO:0016757
Lele28g0888 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 289 489 IPR029044 -
Lele28g0888 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 291 488 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0888 Lele-ChrLele28 5733366 5736070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0888 82 534 Glycosyltransferase AT4G33330 61.886 0.0 634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0899 25 5754387 5757216 Lele28g0888 28 5733366 5736070 hybridization
Lele26g0906 26 5820043 5822928 Lele28g0888 28 5733366 5736070 hybridization