Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02053 ATGTTCGTAGGATCTTGGTATCTCAGCAATGCAATAATGATGAGGGAAATTGAACATTGTGAAGATACCGGCAAGAGAAGGTCTCAAAGAAGTAAAGATTTCAAAGATGTTGAGAAGTTGTTGCATACTCCGTTTCAAGAGAGGAGTATAACATGCAGGCCAAATTGGAAATTAGTGTTGGTTATTGTTATATTGGGAACCTTGGTTACCTTTTTCCATCCTCCAGCTGTTTACAATACCGATCATTTGTCAAACTCTATTATGTCGCGGCCAACTTTTATAAACAGCTGGAGAGGAGGATTTGGAGGAATTGATTCACGTTATGCATCATTTCTCAATATTGAGTGGAACCAAATATCTAATGTTCTCGAAAATTTGAAGGATAAGGACACGTATCAGGGTGTTGGCTTATTAAACTTCAATGACAGTGAGAATGACCACTGGAAGGAGCTGATACCAGAAGCAGAGCATGTAGTCCTTAGTCTGGACTATGTTTCAAGTAATATTACTTGGGAAGTTCTGTATCCCGAATGGATAGATGAAGAAGAAGAATATGAGTTCCCTACTTGTCCAGCTCTACCTAGGATTCAGGTACCAGGAAAGCCCCGGCTTGATCTTATTGCTGTCAAGCTTCCCTGCCACAAGTCAGGACGCTGGTCAAGAGATGTAGCACGTTTGCACTTGCAAATTGAAGCTGCAAGACTTGCTGCCTCTTCCAAAGGATATCATCCAGTGCGTGTGCTTTTGGTCACGGATTGCTTCCCGATTCCAAATCTATTTACCTGCAAGGACCTTATACAGCGTGAAGGGATTGCCTGGCTTTATGAACCCAACCTGAATAGACTGAGGGATAAGCTGCAGCTACCAATTGGTTCATGTGAACTAGCAGTTCCTATGAAGGCTAAAGAAAGGCCACACCGAGAAGCTTATGCAACCATCCTGCACTCTGCACACTTGTATGTTTGTGGAGCCATTACTGCTGCTCAGAGTATTCGAATGGCTGGTTCGACACGAGATCTTGTGATTCTTGTTGACGACACGATTACTGACTATCATAGAGGTGGCTTGGAGGCTGCTGGATGGAAGATTCACACAATCCAAAGAATCAGGAATCCAAAAGCAGAACCAGAGGCATACAACGAGTGGAACTACAGCAAATTCCGTCTCTGGCAGCTAACAGATTATGATAAAATCATTTTCATTGATGCTGACCTTCTAATTCTTAGAAATATCGATTTCCTTTTTGAGATGCCTGAAATAACTGCCATAGGAAACAATGCTACGCTGTTCAACTCAGGTGTAATGGTGGTTGAACCATCAAATTGTACATTCCAACTGCTTATGGATCACATCAATGAAATTGTCTCCTACAATGGAGGGGACCAGGGGTATCTTAATGAAATCTTCACATGGTGGCACCGGATTCCAAAACATATGAACTTCTTGAAGCACTTCTGGGAAGGTGATGAAGAAGAGAAAAAAGTGATGAAAACCCGTCTCTTCGGAGCCGATCCACCAATCCTTTATGTCATCCATTATCTGGGTTATAAACCATGGCTTTGCTTTCGAGACTACGACTGCAACTGGAATGTGGACATTCTGCAGGAGTTTGCAAGTGATGTGGCTCATGCAAGATGGTGGAAGGTGCATGATGCAATGCCACAAAACTTGCATAAGTACTGTCTGCTTAGGTCCAAGCAGAAGGCTTCATTAGAGTGGGATCGTAGACAAGCAGAAAAGGGAAACTACAGTGATGGTCACTGGAAAATCAAGATAGAGGATCCAAGATTGAAAACGTGCTTTGAGGATTTCTGTTTTTGGGAGAGCATGTTATGGCATTGGGGTGAAAAGAATTGGACAGATAATTCCACTGTTAACAATTCGCGCCGATTTGAGGGTGAAAGATCATCAACCCTCACTGAGATGAGAAGATTTGAAGGGATGGAAAGTGAAATTATAAAACGAACCTATTTTGCTTGTTTGAAATTGATTCTGGTGATGCTGTGGTTGTGGTGCGTGGGTGTGGTGCCAGGAAGTAAAGGTGTGGTCGAAGATGAAGAAACTGAAGAAAGTGTGGGCTGGTGGCAGCGGGTCGATCTAGAGGTGTGGAAAAAGGTTGAAGATGGTTTGGCGTTGGGTGCATTTACGAAGGAGGTGTTGTTGGGTGGGGGAGATAAGATTAAGAAGAAGAAAGGGAGTTTAGGAAAGGATGACGATGAAGGATTTCTCGTCTGA 2235 0.43 MFVGSWYLSNAIMMREIEHCEDTGKRRSQRSKDFKDVEKLLHTPFQERSITCRPNWKLVLVIVILGTLVTFFHPPAVYNTDHLSNSIMSRPTFINSWRGGFGGIDSRYASFLNIEWNQISNVLENLKDKDTYQGVGLLNFNDSENDHWKELIPEAEHVVLSLDYVSSNITWEVLYPEWIDEEEEYEFPTCPALPRIQVPGKPRLDLIAVKLPCHKSGRWSRDVARLHLQIEAARLAASSKGYHPVRVLLVTDCFPIPNLFTCKDLIQREGIAWLYEPNLNRLRDKLQLPIGSCELAVPMKAKERPHREAYATILHSAHLYVCGAITAAQSIRMAGSTRDLVILVDDTITDYHRGGLEAAGWKIHTIQRIRNPKAEPEAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITAIGNNATLFNSGVMVVEPSNCTFQLLMDHINEIVSYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKVMKTRLFGADPPILYVIHYLGYKPWLCFRDYDCNWNVDILQEFASDVAHARWWKVHDAMPQNLHKYCLLRSKQKASLEWDRRQAEKGNYSDGHWKIKIEDPRLKTCFEDFCFWESMLWHWGEKNWTDNSTVNNSRRFEGERSSTLTEMRRFEGMESEIIKRTYFACLKLILVMLWLWCVGVVPGSKGVVEDEETEESVGWWQRVDLEVWKKVEDGLALGAFTKEVLLGGGDKIKKKKGSLGKDDDEGFLV 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02053 744 Pfam Glycosyl transferase family 8 314 418 IPR002495 GO:0016757
Vimu1g02053 744 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 306 556 IPR029044 -
Vimu1g02053 744 SUPERFAMILY Nucleotide-diphospho-sugar transferases 308 559 IPR029044 -
Vimu1g02053 744 PANTHER GLYCOGENIN SUBFAMILY MEMBER 221 600 - -
Vimu1g02053 744 FunFam Hexosyltransferase 305 557 - -
Vimu1g02053 744 CDD GT8_Glycogenin 308 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02053 Vimu-Chr1 28509386 28513627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02053 57 616 Glycosyltransferase AT1G77130 71.329 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02053 K20890 - gmx:100787339 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02053 1 28509386 28513627 Vimu1g02053 1 28509386 28513627 ECH